ggKbase home page

L2_022_060G1_scaffold_249

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_022_060G1_scaffold_249_1
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..253
DNA (252bp) protein (84aa)
Transcriptional regulator, Rrf2 family n=2 Tax=Clostridiales RepID=B0AAN4_9FIRM
Transcriptional regulator Rrf2 family {ECO:0000313|EMBL:CDA11355.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
RRF2 family transcriptional regulator
L2_022_060G1_scaffold_249_2
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

267..1466
DNA (1200bp) protein (400aa)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00038344}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00063383};; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
iscS2; cysteine desulfurase (EC:2.8.1.7)
Cysteine desulfurase n=2 Tax=Clostridium bartlettii DSM 16795 RepID=B0AAN3_9FIRM
L2_022_060G1_scaffold_249_3
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1610..2050
DNA (441bp) protein (147aa)
Fe-S iron-sulfur cluster assembly protein, NifU family n=2 Tax=Clostridiales RepID=B0AAN2_9FIRM
Fe-S iron-sulfur cluster assembly protein NifU family {ECO:0000313|EMBL:CDA11353.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
NifU-like protein
L2_022_060G1_scaffold_249_4
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2190..3278
DNA (1089bp) protein (363aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
mnmA; tRNA-specific 2-thiouridylase MnmA (EC:2.8.1.-)
tRNA-specific 2-thiouridylase MnmA n=2 Tax=Clostridiales RepID=B0AAN1_9FIRM
L2_022_060G1_scaffold_249_5
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


3669..6308
DNA (2640bp) protein (880aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
Alanine--tRNA ligase n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0AAN0_9FIRM
alaS; alanyl-tRNA synthetase
L2_022_060G1_scaffold_249_6
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6381..6638
DNA (258bp) protein (86aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0AAM9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDQ96417.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
hypothetical protein
L2_022_060G1_scaffold_249_7
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6743..8941
DNA (2199bp) protein (733aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XG05_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA11349.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
membrane protein
L2_022_060G1_scaffold_249_8
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9098..9523
DNA (426bp) protein (142aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
Putative Holliday junction resolvase n=2 Tax=Clostridiales RepID=B0AAM7_9FIRM
holliday junction resolvase
L2_022_060G1_scaffold_249_9
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9622..9903
DNA (282bp) protein (94aa)
UPF0473 protein CLOBAR_02181 n=2 Tax=Clostridiales RepID=B0AAM6_9FIRM
UPF0473 protein BN488_02374 {ECO:0000256|HAMAP-Rule:MF_01448}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
hypothetical protein
L2_022_060G1_scaffold_249_10
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10090..10533
DNA (444bp) protein (148aa)
Transcriptional regulator, Fur family n=2 Tax=Clostridiales RepID=B0AAM5_9FIRM
Transcriptional regulator, Fur family {ECO:0000313|EMBL:EDQ96413.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
fur; ferric uptake regulation protein
L2_022_060G1_scaffold_249_11
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10786..12462
DNA (1677bp) protein (559aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0AAM4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA11345.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
ribonuclease J family protein
L2_022_060G1_scaffold_249_12
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12649..13800
DNA (1152bp) protein (384aa)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0AAM3_9FIRM
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:EDQ96411.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
D-alanyl-D-alanine carboxypeptidase
L2_022_060G1_scaffold_249_13
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13981..14580
DNA (600bp) protein (200aa)
Peptidase, M50 family {ECO:0000313|EMBL:EDQ96410.1}; EC=3.4.24.- {ECO:0000313|EMBL:EDQ96410.1};; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
Peptidase, M50 family n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0AAM2_9FIRM
membrane-associated peptidase
L2_022_060G1_scaffold_249_14
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14581..15312
DNA (732bp) protein (244aa)
Segregation and condensation protein A n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0AAM1_9FIRM
Segregation and condensation protein A {ECO:0000256|HAMAP-Rule:MF_01805, ECO:0000256|SAAS:SAAS00093938}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
scpA; segregation and condensation protein A
L2_022_060G1_scaffold_249_15
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15314..15847
DNA (534bp) protein (178aa)
Segregation and condensation protein B n=2 Tax=Clostridiales RepID=B0AAM0_9FIRM
Segregation and condensation protein B {ECO:0000256|HAMAP-Rule:MF_01804, ECO:0000256|SAAS:SAAS00086417}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
scpB; segregation and condensation protein B
L2_022_060G1_scaffold_249_16
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15868..16065
DNA (198bp) protein (66aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0AAL9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA11340.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
L2_022_060G1_scaffold_249_17
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16162..16305)
DNA (144bp) protein (48aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0AAL8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETI93150.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
L2_022_060G1_scaffold_249_18
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16502..16639
DNA (138bp) protein (46aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0AAL7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA11338.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
L2_022_060G1_scaffold_249_19
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16781..17527)
DNA (747bp) protein (249aa)
NAD-dependent protein deacetylase {ECO:0000256|HAMAP-Rule:MF_01968}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01968};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01968}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
UPI0003D63350 related cluster n=1 Tax=unknown RepID=UPI0003D63350
NAD-dependent deacetylase
L2_022_060G1_scaffold_249_20
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17735..19396
DNA (1662bp) protein (554aa)
mannosyl-glycoprotein endo-beta-N-acetylglucosamidase (EC:3.2.1.96)
UPI0003D69045 related cluster n=1 Tax=unknown RepID=UPI0003D69045
Uncharacterized protein {ECO:0000313|EMBL:ETI93147.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
L2_022_060G1_scaffold_249_21
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19437..20105)
DNA (669bp) protein (223aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=B0AAL4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA11335.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
L2_022_060G1_scaffold_249_22
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20277..24575
DNA (4299bp) protein (1433aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
DNA polymerase III polC-type n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0AAL3_9FIRM
dnaF; DNA polymerase III PolC-type
L2_022_060G1_scaffold_249_23

Not on your lists

24812..25273
DNA (462bp) protein (154aa)
Ribosome maturation factor RimP n=2 Tax=Clostridiales RepID=B0AAL2_9FIRM
Ribosome maturation factor RimP {ECO:0000313|EMBL:ETJ17025.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L2_022_060G1_scaffold_249_24

Not on your lists

25303..26457
DNA (1155bp) protein (385aa)
Transcription termination factor NusA n=2 Tax=Clostridiales RepID=B0AAL1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETJ17026.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
nusA; Transcription elongation protein
L2_022_060G1_scaffold_249_25

Not on your lists

26488..26763
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0AAL0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETJ17027.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L2_022_060G1_scaffold_249_26

Not on your lists

26753..27073
DNA (321bp) protein (107aa)
Ribosomal protein L7Ae n=2 Tax=Clostridiales RepID=B0AAK9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETJ17028.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
ribosomal protein
L2_022_060G1_scaffold_249_27
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27085..29013
DNA (1929bp) protein (643aa)
Translation initiation factor IF-2 n=2 Tax=Clostridiales RepID=B0AAK8_9FIRM
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
infB; translation initiation factor IF-2
L2_022_060G1_scaffold_249_28
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29035..29418
DNA (384bp) protein (128aa)
Ribosome-binding factor A n=2 Tax=Clostridiales RepID=B0AAK7_9FIRM
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
rbfA; ribosome-binding factor A
L2_022_060G1_scaffold_249_29
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29420..30394
DNA (975bp) protein (325aa)
DHHA1 domain protein n=2 Tax=Clostridiales RepID=B0AAK6_9FIRM
DHHA1 domain protein {ECO:0000313|EMBL:CDA11327.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
RNA-binding protein
L2_022_060G1_scaffold_249_30
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30405..31319
DNA (915bp) protein (305aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
tRNA pseudouridine synthase B n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0AAK5_9FIRM
tRNA pseudouridine synthase B
Displaying items 1-30 of 46 in total

View Taxonomy