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L2_022_060G1_scaffold_307

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_022_060G1_scaffold_307_1
unknown

Not on your lists

3..191
DNA (189bp) protein (63aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0P5H8_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL39252.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L2_022_060G1_scaffold_307_2
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

178..1032
DNA (855bp) protein (285aa)
Site-specific recombinase XerD n=2 Tax=Clostridiales RepID=D4MV37_9FIRM
Phage integrase SAM-like domain protein {ECO:0000313|EMBL:EDS20582.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
Site-specific recombinase XerD
L2_022_060G1_scaffold_307_3
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(994..1359)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PFX6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23248.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_022_060G1_scaffold_307_4
Lactobacillus crispatus, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2995..3753)
DNA (759bp) protein (253aa)
ABC-2 type transporter n=6 Tax=Lactobacillus crispatus RepID=C7XJF7_9LACO
ABC-2 type transporter {ECO:0000313|EMBL:EEU18909.1}; TaxID=575595 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus crispatus 125-2-CHN.;"
ABC transporter permease
L2_022_060G1_scaffold_307_5
Finegoldia magna, Finegoldia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3722..4390)
DNA (669bp) protein (223aa)
ABC transporter, ATP-binding protein n=1 Tax=Finegoldia magna ACS-171-V-Col3 RepID=D9PQ02_FINMA
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFK94389.1}; TaxID=768713 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Finegoldia.;" source="Finegoldia magna ACS-171-V-Col3.;"
putative antibiotic ABC transporter ATP-binding protein
L2_022_060G1_scaffold_307_6
Listeria innocua, Listeria, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4383..4970)
DNA (588bp) protein (196aa)
CAAX amino terminal protease n=15 Tax=Listeria monocytogenes RepID=S5LFR8_LISMN
CAAX amino terminal protease
CAAX amino terminal protease {ECO:0000313|EMBL:AHK25037.1}; CAAX protease {ECO:0000313|EMBL:KJR51283.1}; TaxID=1642 species="Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.;" source="Listeria innocua.;"
L2_022_060G1_scaffold_307_7
Listeria monocytogenes, Listeria, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4948..6216)
DNA (1269bp) protein (423aa)
Bacteriocin biosynthesis docking scaffold, SagD family n=1 Tax=Listeria seeligeri FSL S4-171 RepID=E4A0Q6_LISSE
streptolysin S biosynthesis protein D (SagD)
Streptolysin associated protein SagD {ECO:0000313|EMBL:KJQ80857.1}; TaxID=1639 species="Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.;" source="Listeria monocytogenes.;"
L2_022_060G1_scaffold_307_8
Listeria innocua, Listeria, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6222..7127)
DNA (906bp) protein (302aa)
Bacteriocin biosynthesis cyclodehydratase, SagC family n=1 Tax=Listeria innocua ATCC 33091 RepID=H1GCM2_LISIO
hypothetical protein
Bacteriocin biosynthesis protein {ECO:0000313|EMBL:AHK25021.1}; TaxID=1642 species="Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.;" source="Listeria innocua.;"
L2_022_060G1_scaffold_307_9
Listeria innocua, Listeria, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7117..8019)
DNA (903bp) protein (301aa)
SagB-type dehydrogenase domain protein n=1 Tax=Listeria innocua ATCC 33091 RepID=H1GCM1_LISIO
SagB-type dehydrogenase domain protein {ECO:0000313|EMBL:EHN61022.1}; TaxID=1002366 species="Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.;" source="Listeria innocua ATCC 33091.;"
streptolysin S associated ORF sagB
L2_022_060G1_scaffold_307_10
unknown

Not on your lists

comp(8000..8308)
DNA (309bp) protein (103aa)

This feature has no annotations

L2_022_060G1_scaffold_307_11
unknown

Not on your lists

comp(8432..8605)
DNA (174bp) protein (58aa)

This feature has no annotations

L2_022_060G1_scaffold_307_12
Clostridium carboxidivorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8602..9222)
DNA (621bp) protein (207aa)
Accessory gene regulator B n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q1V6_9CLOT
Accessory gene regulator B {ECO:0000313|EMBL:EET84532.1}; TaxID=536227 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium carboxidivorans P7.;"
Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide
L2_022_060G1_scaffold_307_13
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9562..9765
DNA (204bp) protein (68aa)
Hydrid cluster protein-associated redox disulfide domain protein n=2 Tax=Clostridium RepID=B6FQ62_9CLOT
Hydrid cluster protein-associated redox disulfide domain protein {ECO:0000313|EMBL:EEA81841.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Domain of unknown function (DUF1858).
L2_022_060G1_scaffold_307_14
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9822..10547)
DNA (726bp) protein (242aa)
Negative regulator of genetic competence (MecA) n=2 Tax=Clostridium RepID=B6FQ61_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23657.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Negative regulator of genetic competence, sporulation and motility
L2_022_060G1_scaffold_307_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11156..11371
DNA (216bp) protein (72aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FQ59_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23658.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_022_060G1_scaffold_307_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11495..13366
DNA (1872bp) protein (624aa)
Glycosyl hydrolase, family 18 n=2 Tax=Clostridium RepID=B6FQ58_9CLOT
Glycosyl hydrolase, family 18 {ECO:0000313|EMBL:EEA81837.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted glycosyl hydrolase
L2_022_060G1_scaffold_307_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13441..14118
DNA (678bp) protein (226aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PJE4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23660.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
cell wall hydrolase/autolysin
L2_022_060G1_scaffold_307_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14148..15686
DNA (1539bp) protein (513aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PYX0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23661.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Sua5/YciO/YrdC/YwlC family protein
L2_022_060G1_scaffold_307_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15667..16092
DNA (426bp) protein (142aa)
Ribose-5-phosphate isomerase B {ECO:0000313|EMBL:EEA81834.1}; EC=5.3.1.6 {ECO:0000313|EMBL:EEA81834.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ribose-5-phosphate isomerase (EC:5.3.1.6)
Ribose-5-phosphate isomerase B n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FQ55_9CLOT
L2_022_060G1_scaffold_307_20
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16120..16749
DNA (630bp) protein (210aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Uracil phosphoribosyltransferase n=2 Tax=Clostridium RepID=B6FQ54_9CLOT
uracil phosphoribosyltransferase
L2_022_060G1_scaffold_307_21
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16771..17259
DNA (489bp) protein (163aa)
Deoxycytidylate deaminase (EC:3.5.4.12)
Cytidine and deoxycytidylate deaminase zinc-binding region n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FQ53_9CLOT
Cytidine and deoxycytidylate deaminase zinc-binding region {ECO:0000313|EMBL:EEA81832.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_022_060G1_scaffold_307_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17298..17516)
DNA (219bp) protein (73aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FQ52_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23665.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_022_060G1_scaffold_307_23
Blautia sp. CAG:257, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17648..18361
DNA (714bp) protein (238aa)
Ethanolamine utilization protein n=1 Tax=Blautia sp. CAG:257 RepID=R5WST7_9FIRM
Ethanolamine utilization protein {ECO:0000313|EMBL:CDA06458.1}; TaxID=1262756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:257.;"
Ethanolamine utilization protein
L2_022_060G1_scaffold_307_24
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18428..18640
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FQ51_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81830.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_022_060G1_scaffold_307_25
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18805..19764
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FQ50_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81829.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_022_060G1_scaffold_307_26
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19761..20960
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PH32_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23668.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Flp pilus assembly protein, ATPase CpaF
L2_022_060G1_scaffold_307_27
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20917..21672
DNA (756bp) protein (252aa)
Bacterial type II secretion system domain protein F n=2 Tax=Clostridium RepID=B6FQ48_9CLOT
Bacterial type II secretion system domain protein F {ECO:0000313|EMBL:EEA81827.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Flp pilus assembly protein TadB
L2_022_060G1_scaffold_307_28
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21675..22967
DNA (1293bp) protein (431aa)
Bacterial type II secretion system domain protein F n=2 Tax=Clostridium RepID=B6FQ47_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23670.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_022_060G1_scaffold_307_29
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22999..23175
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PYX7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23671.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_022_060G1_scaffold_307_30
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23189..24523
DNA (1335bp) protein (445aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QP00_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23672.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
Displaying items 1-30 of 49 in total

View Taxonomy