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L2_022_060G1_scaffold_356

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_022_060G1_scaffold_356_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

182..1024
DNA (843bp) protein (281aa)
AAA-like domain protein n=1 Tax=Clostridium difficile Y358 RepID=T4G3S0_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ32184.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
hypothetical protein
L2_022_060G1_scaffold_356_2
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1021..3171
DNA (2151bp) protein (717aa)
Uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G8Y0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDR46134.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
putative membrane protein Tn916-like,CTn1-Orf18
L2_022_060G1_scaffold_356_3
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3168..4175
DNA (1008bp) protein (336aa)
NlpC/P60 family protein n=2 Tax=Clostridiales RepID=E5VLI5_9FIRM
NlpC/P60 family protein {ECO:0000313|EMBL:EFV16268.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
cell wall hydrolase
L2_022_060G1_scaffold_356_4
Coprococcus comes, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4190..5092
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0BFG8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG88013.1}; TaxID=470146 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus comes ATCC 27758.;"
conjugative transposon protein
L2_022_060G1_scaffold_356_5
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5206..5835
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CRS1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY32009.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L2_022_060G1_scaffold_356_6
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5863..6582
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G8Y4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDR46138.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
hypothetical protein
L2_022_060G1_scaffold_356_7
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6651..7217
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G8Y8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDR46142.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
hypothetical protein
L2_022_060G1_scaffold_356_8
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7217..7606
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G8Y9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDR46143.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
hypothetical protein
L2_022_060G1_scaffold_356_9
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7723..7947
DNA (225bp) protein (75aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=B0G8Y6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDR46140.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
hypothetical protein
L2_022_060G1_scaffold_356_10
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8185..8604
DNA (420bp) protein (140aa)
Sigma-70, region 4 n=2 Tax=Clostridiales RepID=B0G8Z1_9FIRM
Sigma-70, region 4 {ECO:0000313|EMBL:EDR46145.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
L2_022_060G1_scaffold_356_11
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8608..8850
DNA (243bp) protein (81aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=C0EE65_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EGX69096.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
hypothetical protein
L2_022_060G1_scaffold_356_12
Blautia sp. CAG:52, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9354..9554
DNA (201bp) protein (67aa)
DNA binding , excisionase family domain protein n=1 Tax=Clostridium difficile Y358 RepID=T4G992_CLODI
DNA binding domain excisionase family {ECO:0000313|EMBL:CDB20567.1}; TaxID=1262758 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:52.;"
DNA binding domain, excisionase family
L2_022_060G1_scaffold_356_13
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9576..11042
DNA (1467bp) protein (489aa)
Phage integrase family protein n=1 Tax=Clostridium difficile Y358 RepID=T4G9P1_CLODI
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EDR46149.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
Phage integrase family.
L2_022_060G1_scaffold_356_14
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11624..12499)
DNA (876bp) protein (292aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FQE6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81774.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_022_060G1_scaffold_356_15
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12515..13792)
DNA (1278bp) protein (426aa)
Serine--tRNA ligase {ECO:0000313|EMBL:EEA81775.1}; EC=6.1.1.11 {ECO:0000313|EMBL:EEA81775.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase n=2 Tax=Clostridium RepID=B6FQE7_9CLOT
L2_022_060G1_scaffold_356_16
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13812..14348)
DNA (537bp) protein (179aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FQE8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22357.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_022_060G1_scaffold_356_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14372..15274)
DNA (903bp) protein (301aa)
ParB-like protein n=2 Tax=Clostridium RepID=B6FQE9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22356.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ParB-like partition proteins
L2_022_060G1_scaffold_356_18
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15274..16041)
DNA (768bp) protein (256aa)
CobQ/CobB/MinD/ParA nucleotide binding domain protein n=2 Tax=Clostridium RepID=B6FQF0_9CLOT
CobQ/CobB/MinD/ParA nucleotide binding domain protein {ECO:0000313|EMBL:EEA81778.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ATPases involved in chromosome partitioning
L2_022_060G1_scaffold_356_19
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16263..17219
DNA (957bp) protein (319aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FQF1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22354.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
alpha/beta fold family hydrolase
L2_022_060G1_scaffold_356_20
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17267..17980)
DNA (714bp) protein (238aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
16S rRNA m(7)G-527 methyltransferase (EC:2.1.1.- 2.1.-.-)
Ribosomal RNA small subunit methyltransferase G n=2 Tax=Clostridium RepID=B6FQF2_9CLOT
L2_022_060G1_scaffold_356_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17987..19933)
DNA (1947bp) protein (649aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=2 Tax=Clostridium RepID=B6FQF3_9CLOT
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
glucose-inhibited division protein A
L2_022_060G1_scaffold_356_22
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19899..21272)
DNA (1374bp) protein (458aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
tRNA modification GTPase MnmE n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FQF4_9CLOT
tRNA modification GTPase trmE
L2_022_060G1_scaffold_356_23
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21339..22151)
DNA (813bp) protein (271aa)
R3H domain protein n=2 Tax=Clostridium nexile DSM 1787 RepID=B6FVU0_9CLOT
R3H domain protein {ECO:0000313|EMBL:EEA79851.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted RNA-binding protein
L2_022_060G1_scaffold_356_24
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22205..23449)
DNA (1245bp) protein (415aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PNB4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22349.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
membrane protein insertase, YidC/Oxa1 family, C-terminal domain
L2_022_060G1_scaffold_356_25
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23474..23686)
DNA (213bp) protein (71aa)
Putative membrane protein insertion efficiency factor n=2 Tax=Clostridium RepID=B6FQF7_9CLOT
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
conserved hypothetical protein TIGR00278
L2_022_060G1_scaffold_356_26
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23690..24040)
DNA (351bp) protein (117aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Ribonuclease P protein component n=2 Tax=Clostridium RepID=B6FQF8_9CLOT
ribonuclease P
L2_022_060G1_scaffold_356_27
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(24090..24224)
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=5 Tax=Firmicutes RepID=B5CNF8_9FIRM
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|RuleBase:RU000566}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
LSU ribosomal protein L34P
L2_022_060G1_scaffold_356_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24781..26166
DNA (1386bp) protein (462aa)
Chromosomal replication initiator protein DnaA n=2 Tax=Clostridium RepID=B6FQG1_9CLOT
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
chromosomal replication initiator protein DnaA
L2_022_060G1_scaffold_356_29
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26438..27547
DNA (1110bp) protein (370aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
DNA polymerase III, beta subunit (EC:2.7.7.7)
DNA polymerase III subunit beta n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FQG2_9CLOT
L2_022_060G1_scaffold_356_30
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27551..27760
DNA (210bp) protein (70aa)
S4 domain protein n=2 Tax=Clostridium RepID=B6FQG3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22342.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
Displaying items 1-30 of 38 in total

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