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L2_022_060G1_scaffold_406

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_022_060G1_scaffold_406_1
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3..110
DNA (108bp) protein (36aa)
Uncharacterized protein (Fragment) n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CJC2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI67426.1}; Flags: Fragment;; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
L2_022_060G1_scaffold_406_2
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

123..536
DNA (414bp) protein (138aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FRQ5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81342.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_022_060G1_scaffold_406_3
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

615..1970
DNA (1356bp) protein (452aa)
DNA repair protein radA n=2 Tax=Clostridium RepID=B6FRQ6_9CLOT
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
DNA repair protein RadA
L2_022_060G1_scaffold_406_4
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2030..2902)
DNA (873bp) protein (291aa)
L-serine dehydratase, iron-sulfur-dependent, alpha subunit {ECO:0000313|EMBL:EEA81344.1}; EC=4.3.1.17 {ECO:0000313|EMBL:EEA81344.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L-serine dehydratase, iron-sulfur-dependent subunit alpha (EC:4.3.1.17)
L-serine dehydratase, iron-sulfur-dependent, alpha subunit n=2 Tax=Clostridium RepID=B6FRQ7_9CLOT
L2_022_060G1_scaffold_406_5
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2914..3582)
DNA (669bp) protein (223aa)
L-serine dehydratase, iron-sulfur-dependent, beta subunit {ECO:0000313|EMBL:EEA81345.1}; EC=4.3.1.17 {ECO:0000313|EMBL:EEA81345.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L-serine ammonia-lyase (EC:4.3.1.17)
L-serine dehydratase, iron-sulfur-dependent, beta subunit n=2 Tax=Clostridium RepID=B6FRQ8_9CLOT
L2_022_060G1_scaffold_406_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3779..5317
DNA (1539bp) protein (513aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FRQ9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22203.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_022_060G1_scaffold_406_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5332..6021
DNA (690bp) protein (230aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FRR0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22204.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_022_060G1_scaffold_406_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6074..7264)
DNA (1191bp) protein (397aa)
Hydrogenase maturation GTPase HydF n=2 Tax=Clostridium RepID=B6FRR1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22205.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
small GTP-binding protein
L2_022_060G1_scaffold_406_9
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7275..8696)
DNA (1422bp) protein (474aa)
Iron-only hydrogenase maturation rSAM protein HydG n=2 Tax=Clostridium RepID=B6FRR2_9CLOT
Iron-only hydrogenase maturation rSAM protein HydG {ECO:0000313|EMBL:EEA81349.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
iron-only hydrogenase maturation protein HydG
L2_022_060G1_scaffold_406_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8809..9846)
DNA (1038bp) protein (346aa)
iron-only hydrogenase maturation protein HydE (EC:2.8.1.6)
Iron-only hydrogenase maturation rSAM protein HydE n=2 Tax=Clostridium RepID=B6FRR3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22207.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_022_060G1_scaffold_406_11
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9871..10122)
DNA (252bp) protein (84aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PD25_9CLOT
Putative iron-only hydrogenase system regulator {ECO:0000313|EMBL:EEA81351.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_022_060G1_scaffold_406_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10411..11109
DNA (699bp) protein (233aa)
nrdG; ribonucleoside-triphosphate reductase-like protein (EC:1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase activating protein n=2 Tax=Clostridium RepID=B6FRR5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22209.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_022_060G1_scaffold_406_13
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11229..13595
DNA (2367bp) protein (789aa)
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:EEA81353.1}; EC=1.17.4.2 {ECO:0000313|EMBL:EEA81353.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
anaerobic ribonucleoside-triphosphate reductase (EC:1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase n=2 Tax=Clostridium RepID=B6FRR6_9CLOT
L2_022_060G1_scaffold_406_14
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13614..14408
DNA (795bp) protein (265aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FRR7_9CLOT
L2_022_060G1_scaffold_406_15
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14458..15063)
DNA (606bp) protein (202aa)
Transcriptional regulator, TetR family n=2 Tax=Clostridium RepID=B6FRR8_9CLOT
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EEA81355.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Transcriptional regulator
L2_022_060G1_scaffold_406_16
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15180..17144)
DNA (1965bp) protein (655aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Threonine--tRNA ligase n=2 Tax=Clostridium RepID=B6FRR9_9CLOT
threonyl-tRNA synthetase
L2_022_060G1_scaffold_406_17
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17636..19789
DNA (2154bp) protein (718aa)
Tex-like protein N-terminal domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FRS0_9CLOT
Tex-like protein N-terminal domain protein {ECO:0000313|EMBL:EEA81357.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Transcriptional accessory protein
L2_022_060G1_scaffold_406_18
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19792..20505
DNA (714bp) protein (238aa)
SIS domain protein n=2 Tax=Clostridium RepID=B6FRS1_9CLOT
SIS domain protein {ECO:0000313|EMBL:EEA81358.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
SIS domain protein
L2_022_060G1_scaffold_406_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20809..22659
DNA (1851bp) protein (617aa)
PTS system, beta-glucoside-specific, IIABC component {ECO:0000313|EMBL:EEA81360.1}; EC=2.7.1.69 {ECO:0000313|EMBL:EEA81360.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
PTS system, glucose-like IIB component domain protein (EC:2.7.1.69)
PTS system, beta-glucoside-specific, IIABC component n=2 Tax=Clostridium RepID=B6FRS3_9CLOT
L2_022_060G1_scaffold_406_20
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22670..24100
DNA (1431bp) protein (477aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QJT8_9CLOT
Glycosyl hydrolase, family 1 {ECO:0000313|EMBL:EEA81361.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase
L2_022_060G1_scaffold_406_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24410..25042
DNA (633bp) protein (211aa)
Uncharacterized protein n=2 Tax=Clostridium PF67_9CLOT">RepID=R6PF67_9CLOT
Riboflavin transporter {ECO:0000256|PIRNR:PIRNR037778}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Predicted membrane protein
L2_022_060G1_scaffold_406_22
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25125..25634
DNA (510bp) protein (170aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FRS8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81365.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_022_060G1_scaffold_406_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25650..26081
DNA (432bp) protein (144aa)
Hydrolase, P-loop family n=2 Tax=Clostridium RepID=B6FRS9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22222.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
conserved hypothetical nucleotide-binding protein
L2_022_060G1_scaffold_406_24
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26084..26794
DNA (711bp) protein (237aa)
Universal bacterial protein YeaZ n=2 Tax=Clostridium RepID=B6FRT0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22223.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Inactive homolog of metal-dependent proteases, putative molecular chaperone
L2_022_060G1_scaffold_406_25
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26778..27218
DNA (441bp) protein (147aa)
Ribosomal-protein-alanine acetyltransferase n=2 Tax=Clostridium RepID=B6FRT1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22224.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ribosomal-protein-alanine acetyltransferase
L2_022_060G1_scaffold_406_26
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27327..27557
DNA (231bp) protein (77aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FRT2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22225.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_022_060G1_scaffold_406_27
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27573..28484
DNA (912bp) protein (304aa)
Ribonuclease Z {ECO:0000256|HAMAP-Rule:MF_01818}; Short=RNase Z {ECO:0000256|HAMAP-Rule:MF_01818};; EC=3.1.26.11 {ECO:0000256|HAMAP-Rule:MF_01818};; tRNA 3 endonuclease {ECO:0000256|HAMAP-Rule:MF_01818}; tRNase Z {ECO:0000256|HAMAP-Rule:MF_01818}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
RNAse Z (EC:3.1.26.11)
Ribonuclease Z n=2 Tax=Clostridium RepID=B6FRT3_9CLOT
L2_022_060G1_scaffold_406_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


28485..29543
DNA (1059bp) protein (353aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
O-sialoglycoprotein endopeptidase (EC:3.4.24.57)
tRNA N6-adenosine threonylcarbamoyltransferase n=2 Tax=Clostridium RepID=B6FRT4_9CLOT
L2_022_060G1_scaffold_406_29
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29545..30249
DNA (705bp) protein (235aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC:2.7.7.60)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=2 Tax=Clostridium RepID=B6FRT5_9CLOT
L2_022_060G1_scaffold_406_30
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30174..30836)
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae CAG:59 RepID=R5EX09_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX97275.1}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
Displaying 30 items

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