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L2_022_060G1_scaffold_518

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_022_060G1_scaffold_518_1
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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457..1329
DNA (873bp) protein (291aa)
ABC transporter, substrate-binding protein, family 3 n=3 Tax=Firmicutes RepID=B6FLY2_9CLOT
Extracellular solute-binding protein family 3 {ECO:0000313|EMBL:CDC22725.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-)
L2_022_060G1_scaffold_518_2
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1352..2011
DNA (660bp) protein (220aa)
ABC transporter, permease protein n=3 Tax=Firmicutes RepID=B6FLY3_9CLOT
Polar amino acid ABC transporter {ECO:0000313|EMBL:CDC22726.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
amino acid ABC transporter permease
L2_022_060G1_scaffold_518_3
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1992..2666
DNA (675bp) protein (225aa)
ABC transporter, permease protein n=3 Tax=Firmicutes RepID=B6FLY4_9CLOT
ABC transporter, permease protein {ECO:0000313|EMBL:EEA82974.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
amino acid ABC transporter permease
L2_022_060G1_scaffold_518_4
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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2668..3420
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. 29_1 RepID=E7GAG9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFW04965.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
Fe(3+)-transporting ATPase
L2_022_060G1_scaffold_518_5
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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3653..4156
DNA (504bp) protein (168aa)
Transcription elongation factor GreA n=2 Tax=Firmicutes RepID=E7GAH0_9FIRM
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
GreA/GreB family elongation factor
L2_022_060G1_scaffold_518_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4259..5020
DNA (762bp) protein (254aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PGK7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22730.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_022_060G1_scaffold_518_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5053..5814
DNA (762bp) protein (254aa)
RNA polymerase sigma factor RpoD n=2 Tax=Clostridium RepID=B6FM19_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22731.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_022_060G1_scaffold_518_8
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

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5811..6596
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MJ90_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS71090.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
ATPases involved in chromosome partitioning
L2_022_060G1_scaffold_518_9
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6632..7345)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium CAG:215 RepID=R6EMZ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA98151.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
Histidinol phosphatase and related hydrolases of the PHP family
L2_022_060G1_scaffold_518_10
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

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7570..10101
DNA (2532bp) protein (844aa)
glycerol dehydratase, cobalamin-independent, large subunit (EC:2.3.1.54 4.2.1.30)
PFL2/glycerol dehydratase family glycyl radical enzyme n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MJT9_9FIRM
PFL2/glycerol dehydratase family glycyl radical enzyme {ECO:0000313|EMBL:EOS71088.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
L2_022_060G1_scaffold_518_11
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10127..10918
DNA (792bp) protein (264aa)
glycyl-radical enzyme activating protein family (EC:1.97.1.4)
Glycyl-radical enzyme activating protein family n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MTF8_9FIRM
Glycyl-radical enzyme activating protein family {ECO:0000313|EMBL:EOS71087.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
L2_022_060G1_scaffold_518_12
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10921..11298
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MK74_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS71086.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
microcompartments protein
L2_022_060G1_scaffold_518_13
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11305..11766
DNA (462bp) protein (154aa)
Ethanolamine utilization protein, EutP n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MJ86_9FIRM
Ethanolamine utilization protein, EutP {ECO:0000313|EMBL:EOS71085.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
propanediol utilization protein PduV-like protein
L2_022_060G1_scaffold_518_14
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11893..12696
DNA (804bp) protein (268aa)
Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases (EC:4.1.2.17)
L-ribulose-5-phosphate 4-epimerase n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MJ05_9FIRM
L-ribulose-5-phosphate 4-epimerase {ECO:0000313|EMBL:EOS71084.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
L2_022_060G1_scaffold_518_15
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12725..13240
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MJT3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS71083.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
Uncharacterized protein, possibly involved in utilization of glycolate and propanediol
L2_022_060G1_scaffold_518_16
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13231..14619
DNA (1389bp) protein (463aa)
Propionaldehyde dehydrogenase n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MTF2_9FIRM
Propionaldehyde dehydrogenase {ECO:0000313|EMBL:EOS71082.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
aldehyde dehydrogenase
L2_022_060G1_scaffold_518_17
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14635..15852
DNA (1218bp) protein (406aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MK68_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS71081.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
Threonine dehydrogenase and related Zn-dependent dehydrogenases
L2_022_060G1_scaffold_518_18
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15871..16188
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MJ81_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS71080.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
Carbon dioxide concentrating mechanism/carboxysome shell protein
L2_022_060G1_scaffold_518_19
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16232..16507
DNA (276bp) protein (92aa)
Propanediol utilization protein PduA n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MJ03_9FIRM
Propanediol utilization protein PduA {ECO:0000313|EMBL:EOS71079.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
Carbon dioxide concentrating mechanism/carboxysome shell protein
L2_022_060G1_scaffold_518_20
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16536..16820
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MJS8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS71078.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
microcompartments protein
L2_022_060G1_scaffold_518_21
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16833..17255
DNA (423bp) protein (141aa)
BMC domain protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TNQ0_9FIRM
BMC domain protein {ECO:0000313|EMBL:CCZ67290.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Carbon dioxide concentrating mechanism/carboxysome shell protein
L2_022_060G1_scaffold_518_22
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17381..18022
DNA (642bp) protein (214aa)
Phosphate propanoyltransferase {ECO:0000256|PIRNR:PIRNR010130}; EC=2.3.1.222 {ECO:0000256|PIRNR:PIRNR010130};; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
Phosphate propanoyltransferase n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MK64_9FIRM
Propanediol utilization protein
L2_022_060G1_scaffold_518_23
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18056..18322
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MJ75_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS71075.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
Carbon dioxide concentrating mechanism/carboxysome shell protein
L2_022_060G1_scaffold_518_24
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18332..19657
DNA (1326bp) protein (442aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MIZ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS71074.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
Predicted NADH:ubiquinone oxidoreductase, subunit RnfC
L2_022_060G1_scaffold_518_25
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19674..20222
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MJS3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS71073.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
Carbon dioxide concentrating mechanism/carboxysome shell protein
L2_022_060G1_scaffold_518_26
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20244..21008
DNA (765bp) protein (255aa)
Transcriptional regulator, DeoR family n=1 Tax=Clostridium sp. D5 RepID=F0Z0E7_9CLOT
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:EGB92568.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Transcriptional regulators of sugar metabolism
L2_022_060G1_scaffold_518_27
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21018..22166
DNA (1149bp) protein (383aa)
Propanol dehydrogenase n=1 Tax=Clostridium sp. D5 RepID=F0Z0E8_9CLOT
Propanol dehydrogenase {ECO:0000313|EMBL:EGB92569.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Alcohol dehydrogenase, class IV
Displaying 27 items

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