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L2_022_103G1_scaffold_93

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_022_103G1_scaffold_93_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1..246
DNA (246bp) protein (82aa)
ATP-binding protein of ABC transporter system n=4 Tax=Bifidobacterium bifidum RepID=E3EQG7_BIFBS
ABC transporter ATP-binding protein
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EKE49891.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L2_022_103G1_scaffold_93_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(852..1907)
DNA (1056bp) protein (352aa)
NAD-dependent oxidoreductase (EC:1.1.1.179)
NAD-dependent oxidoreductase {ECO:0000313|EMBL:KFI43796.1}; EC=1.1.1.179 {ECO:0000313|EMBL:KFI43796.1};; EC=1.3.1.20 {ECO:0000313|EMBL:KFI43796.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
NAD-dependent oxidoreductase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NYQ4_BIFBP
L2_022_103G1_scaffold_93_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2134..2652)
DNA (519bp) protein (173aa)
ptpA; putative low molecular weight protein-tyrosine-phosphatase (EC:3.1.3.48)
Low molecular weight phosphotyrosine protein phosphatase n=2 Tax=Bifidobacterium bifidum RepID=E4VBV9_BIFBI
Putative low molecular weight protein-tyrosine-phosphatase {ECO:0000313|EMBL:EKE49894.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L2_022_103G1_scaffold_93_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2722..3381)
DNA (660bp) protein (220aa)
Dihydrofolate reductase {ECO:0000313|EMBL:AFL05050.1}; EC=1.5.1.3 {ECO:0000313|EMBL:AFL05050.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Dihydrofolate reductase n=8 Tax=Bifidobacterium RepID=E3EQH1_BIFBS
dfrA; dihydrofolate reductase
L2_022_103G1_scaffold_93_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3429..4301)
DNA (873bp) protein (291aa)
thyA; thymidylate synthase (EC:2.1.1.45)
Thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215270}; Short=TS {ECO:0000256|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215290};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Thymidylate synthase n=3 Tax=Bifidobacterium RepID=I3WJI8_BIFBI
L2_022_103G1_scaffold_93_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4753..5166
DNA (414bp) protein (138aa)
OsmC family protein n=4 Tax=Bifidobacterium RepID=E3EQH3_BIFBS
OsmC family protein
OsmC family protein {ECO:0000313|EMBL:ADO53629.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_022_103G1_scaffold_93_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5308..6348)
DNA (1041bp) protein (347aa)
Universal stress protein n=4 Tax=Bifidobacterium bifidum RepID=E3EQH4_BIFBS
universal stress protein family
Universal stress protein {ECO:0000313|EMBL:AFL05053.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_022_103G1_scaffold_93_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6628..7434)
DNA (807bp) protein (269aa)
Cell wall-associated protein (NlpC/P60 family domain) {ECO:0000313|EMBL:KFI43802.1}; EC=3.4.19.11 {ECO:0000313|EMBL:KFI43802.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Cell wall-associated protein (NlpC/P60 family domain) n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GCF3_9BIFI
NlpC/P60 domain
L2_022_103G1_scaffold_93_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7585..8607)
DNA (1023bp) protein (341aa)
sle; N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:AFL05055.1}; EC=3.5.1.28 {ECO:0000313|EMBL:AFL05055.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WJJ2_BIFBI
L2_022_103G1_scaffold_93_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8772..9914
DNA (1143bp) protein (381aa)
serC; phosphoserine aminotransferase (EC:2.6.1.52)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
SerC Phosphoserine aminotransferase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NYR2_BIFBP
L2_022_103G1_scaffold_93_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10025..10279
DNA (255bp) protein (85aa)
Uncharacterized protein n=4 Tax=Bifidobacterium RepID=I3WJJ5_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53634.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_022_103G1_scaffold_93_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10286..11554)
DNA (1269bp) protein (423aa)
senX3; sensor-like histidine kinase (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Signal transduction histidine kinase n=3 Tax=Bifidobacterium RepID=E3ER60_BIFBS
L2_022_103G1_scaffold_93_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11738..12418
DNA (681bp) protein (227aa)
Phosphate-specific transport system accessory protein PhoU n=5 Tax=Bifidobacterium bifidum RepID=I3WJJ7_BIFBI
phoU; phosphate transport system regulatory protein
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_022_103G1_scaffold_93_14
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12639..12908)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6HA92_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB23122.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
L2_022_103G1_scaffold_93_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12952..13692)
DNA (741bp) protein (247aa)
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512}; Short=BPG-dependent PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01039};; Short=dPGM {ECO:0000256|HAMAP-Rule:MF_01039};; EC=5.4.2.11 {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=7 Tax=Bifidobacterium bifidum RepID=E4NYR6_BIFBP
gpm5; phosphoglycerate mutase
L2_022_103G1_scaffold_93_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13770..14735)
DNA (966bp) protein (322aa)
1,4-dihydroxy-2-naphthoate octaprenyltransferase {ECO:0000256|HAMAP-Rule:MF_01937}; Short=DHNA-octaprenyltransferase {ECO:0000256|HAMAP-Rule:MF_01937};; EC=2.5.1.74 {ECO:0000256|HAMAP-Rule:MF_01937};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
1,4-dihydroxy-2-naphthoate octaprenyltransferase n=3 Tax=Bifidobacterium bifidum RepID=E4VBU5_BIFBI
menA; 1,4-dihydroxy-2-naphthoateoctaprenyl transferase
L2_022_103G1_scaffold_93_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14950..16641)
DNA (1692bp) protein (564aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
lysS; lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WJK1_BIFBI
L2_022_103G1_scaffold_93_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17008..18195
DNA (1188bp) protein (396aa)
Transporter, major facilitator family protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4VBU3_BIFBI
araJ; arabinose polymer MFS transporter
Arabinose polymer MFS transporter {ECO:0000313|EMBL:EKE50158.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L2_022_103G1_scaffold_93_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18374..20449
DNA (2076bp) protein (692aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ER67_BIFBS
hypothetical protein
Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:ADO53642.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_022_103G1_scaffold_93_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20518..21129
DNA (612bp) protein (204aa)
Uncharacterized protein n=5 Tax=Bifidobacterium bifidum RepID=I3WJK4_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53643.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_022_103G1_scaffold_93_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21183..22136)
DNA (954bp) protein (318aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=K2M1G5_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKF15756.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_022_103G1_scaffold_93_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22169..23884)
DNA (1716bp) protein (572aa)
PspC domain protein n=2 Tax=Bifidobacterium bifidum RepID=U2BZ36_BIFBI
PspC domain protein {ECO:0000313|EMBL:ERI83479.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ98697.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
PspC domain
L2_022_103G1_scaffold_93_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23965..25443
DNA (1479bp) protein (493aa)
Histidine kinase sensor of two component system n=4 Tax=Bifidobacterium bifidum RepID=E4NYS4_BIFBP
histidine kinase sensor
Histidine kinase sensor of two component system {ECO:0000313|EMBL:KFI43816.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_022_103G1_scaffold_93_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25440..26273
DNA (834bp) protein (278aa)
Response regulator of two-component system n=3 Tax=Bifidobacterium bifidum RepID=K2I5Y4_BIFBI
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:ERI83477.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
response regulator of two-component system
L2_022_103G1_scaffold_93_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26395..27843
DNA (1449bp) protein (483aa)
gnt; 6-phosphogluconate dehydrogenase (EC:1.1.1.44)
6-phosphogluconate dehydrogenase, decarboxylating {ECO:0000256|PIRNR:PIRNR000109}; EC=1.1.1.44 {ECO:0000256|PIRNR:PIRNR000109};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
6-phosphogluconate dehydrogenase, decarboxylating n=4 Tax=Bifidobacterium bifidum RepID=E4NYS6_BIFBP
L2_022_103G1_scaffold_93_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27921..28619)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CFZ7_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83475.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L2_022_103G1_scaffold_93_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28713..29501)
DNA (789bp) protein (263aa)
pgl; 6-phosphogluconolactonase (EC:3.1.1.31)
6-phosphogluconolactonase {ECO:0000313|EMBL:AFL05073.1}; EC=3.1.1.31 {ECO:0000313|EMBL:AFL05073.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
6-phosphogluconolactonase n=3 Tax=Bifidobacterium bifidum RepID=I3WJL0_BIFBI
L2_022_103G1_scaffold_93_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29670..30659)
DNA (990bp) protein (330aa)
Oxppcycle protein OpcA n=5 Tax=Bifidobacterium bifidum RepID=E3ER76_BIFBS
opcA; oxppcycle protein OpcA
Outer membrane protein {ECO:0000313|EMBL:EKF16802.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_022_103G1_scaffold_93_29
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30656..32242)
DNA (1587bp) protein (529aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
zwf; glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49)
Glucose-6-phosphate 1-dehydrogenase n=4 Tax=Bifidobacterium RepID=R6HA80_9BIFI
L2_022_103G1_scaffold_93_30
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32479..33003)
DNA (525bp) protein (175aa)
Putative transposase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GPC1_9BIFI
Putative transposase {ECO:0000313|EMBL:CDB23106.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
putative transposase
Displaying items 1-30 of 57 in total

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