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L2_022_103G1_scaffold_325

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_022_103G1_scaffold_325_1
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


2..766
DNA (765bp) protein (255aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
Alanine--tRNA ligase n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3L2M1_BIFBR
Alanyl-tRNA synthetase
L2_022_103G1_scaffold_325_2
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

775..1227
DNA (453bp) protein (151aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
Putative Holliday junction resolvase n=3 Tax=Bifidobacterium breve RepID=F6C9R4_BIFBA
RNAse H domain protein, YqgF family
L2_022_103G1_scaffold_325_3
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1240..2427
DNA (1188bp) protein (396aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZFP6_BIFBR
Hypothetical protein with aminodeoxychorismate lyase domain
Uncharacterized protein {ECO:0000313|EMBL:EPD75176.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L2_022_103G1_scaffold_325_4
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2527..3000)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZLC5_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:EPD75175.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
putative TadV type IV secretion peptidase
L2_022_103G1_scaffold_325_5
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3049..4236
DNA (1188bp) protein (396aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
Chorismate synthase n=1 Tax=Bifidobacterium breve HPH0326 RepID=S3AFX7_BIFBR
Chorismate synthase
L2_022_103G1_scaffold_325_6
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4271..5893
DNA (1623bp) protein (541aa)
3-dehydroquinate synthase n=2 Tax=Bifidobacterium breve RepID=F6C9R0_BIFBA
Shikimate kinase/3-dehydroquinate synthase {ECO:0000313|EMBL:AHJ21075.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
Shikimate kinase/3-dehydroquinate synthase
L2_022_103G1_scaffold_325_7
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6045..6491
DNA (447bp) protein (149aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
3-dehydroquinate dehydratase n=2 Tax=Bifidobacterium breve RepID=H3L2M7_BIFBR
3-dehydroquinate dehydratase
L2_022_103G1_scaffold_325_8
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6611..8275
DNA (1665bp) protein (555aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=1385940 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCM 7019.;"
CTP synthase n=3 Tax=Bifidobacterium breve RepID=F6C9Q8_BIFBA
CTP synthase
L2_022_103G1_scaffold_325_9
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8436..10064
DNA (1629bp) protein (543aa)
hypothetical protein n=1 Tax=Bifidobacterium breve RepID=UPI00030FAE99
Uncharacterized protein {ECO:0000313|EMBL:ABE95590.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
Conserved hypothetical protein with ErfK/YbiS/YcfS/YnhG domain
L2_022_103G1_scaffold_325_10
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10243..11742
DNA (1500bp) protein (500aa)
FeS assembly protein SufB n=5 Tax=Bifidobacterium breve RepID=F6C9Q6_BIFBA
FeS assembly protein SufB
FeS assembly protein SufB {ECO:0000313|EMBL:AEF28049.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L2_022_103G1_scaffold_325_11
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11748..12983
DNA (1236bp) protein (412aa)
ATP-binding protein of ABC transporter system n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9XZL4_BIFBU
ATP-binding protein of ABC transporter system
ATP-binding protein of ABC transporter system {ECO:0000313|EMBL:ABE95592.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L2_022_103G1_scaffold_325_12
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13010..13789
DNA (780bp) protein (260aa)
FeS assembly ATPase SufC n=6 Tax=Bifidobacterium breve RepID=F6C9Q4_BIFBA
FeS assembly protein SufC
FeS assembly ATPase SufC {ECO:0000313|EMBL:AEF27914.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L2_022_103G1_scaffold_325_13
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13958..15232
DNA (1275bp) protein (425aa)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216};; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
Cysteine desulfurase n=1 Tax=Bifidobacterium breve (strain ACS-071-V-Sch8b) RepID=F6C9Q3_BIFBA
cysteine desulfurase, SufS family
L2_022_103G1_scaffold_325_14
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15244..15798
DNA (555bp) protein (185aa)
SUF system FeS assembly protein, NifU family n=5 Tax=Bifidobacterium breve RepID=F6C9Q2_BIFBA
IscU protein
NifU family SUF system FeS assembly protein {ECO:0000313|EMBL:EPD75165.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L2_022_103G1_scaffold_325_15
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15806..16390
DNA (585bp) protein (195aa)
Uncharacterized protein n=4 Tax=Bifidobacterium breve RepID=F6C9Q1_BIFBA
Hypothetical protein with DUF59 domain
Uncharacterized protein {ECO:0000313|EMBL:ERI87543.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L2_022_103G1_scaffold_325_16
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16511..17755)
DNA (1245bp) protein (415aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565}; EC=2.7.7.27 {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565};; ADP-glucose pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00624}; ADP-glucose synthase {ECO:0000256|HAMAP-Rule:MF_00624}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
Glucose-1-phosphate adenylyltransferase n=4 Tax=Bifidobacterium breve RepID=F6C9Q0_BIFBA
Glucose-1-phosphate adenylyltransferase
L2_022_103G1_scaffold_325_17
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17959..18837)
DNA (879bp) protein (293aa)
SpoU rRNA methylase family protein n=5 Tax=Bifidobacterium breve RepID=F9XZM0_BIFBU
SpoU rRNA methylase family protein
RNA methyltransferase, TrmH family {ECO:0000313|EMBL:ERI87540.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L2_022_103G1_scaffold_325_18
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19044..19877
DNA (834bp) protein (278aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9XZM1_BIFBU
Hypothetical protein with DUF558 domain, RNA methyl transferase
L2_022_103G1_scaffold_325_19
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19988..20326
DNA (339bp) protein (113aa)
Histidine triad domain protein n=6 Tax=Bifidobacterium breve RepID=F6C9P7_BIFBA
HIT family protein
Histidine triad domain protein {ECO:0000313|EMBL:AEF27661.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L2_022_103G1_scaffold_325_20
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20345..21529
DNA (1185bp) protein (395aa)
PhoH family protein n=2 Tax=Bifidobacterium breve RepID=F6C9P6_BIFBA
PhoH protein
PhoH protein {ECO:0000313|EMBL:AHJ21089.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L2_022_103G1_scaffold_325_21
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21519..22070
DNA (552bp) protein (184aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
Endoribonuclease YbeY n=5 Tax=Bifidobacterium breve RepID=F9XZM4_BIFBU
Conserved hypothetical protein in uncharacterized protein family UPF0054
L2_022_103G1_scaffold_325_22
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22095..23528
DNA (1434bp) protein (478aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZYN3_BIFBR
putative membrane spanning protein with CBS and transporter associated domains
Uncharacterized protein {ECO:0000313|EMBL:EPD75157.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L2_022_103G1_scaffold_325_23
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23530..24537
DNA (1008bp) protein (336aa)
GTPase Era n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2CAL7_BIFBR
GTP-binding protein
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L2_022_103G1_scaffold_325_24
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24611..26644)
DNA (2034bp) protein (678aa)
AMP-binding enzyme n=3 Tax=Bifidobacterium breve RepID=D4BPA2_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:EPD75155.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
Long-chain-fatty-acid--CoA ligase
L2_022_103G1_scaffold_325_25
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27037..28200
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S3AFW2_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:EPD75154.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
NAD(P) transhydrogenase subunit alpha part 1
L2_022_103G1_scaffold_325_26
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28216..28521
DNA (306bp) protein (102aa)
NAD(P) transhydrogenase alpha subunit n=4 Tax=Bifidobacterium breve RepID=F9XZM9_BIFBU
NAD(P) transhydrogenase alpha subunit
NAD(P) transhydrogenase alpha subunit {ECO:0000313|EMBL:AHJ21095.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L2_022_103G1_scaffold_325_27
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28521..29945
DNA (1425bp) protein (475aa)
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
NAD(P) transhydrogenase subunit beta n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZYM7_BIFBR
NAD(P) transhydrogenase subunit beta
L2_022_103G1_scaffold_325_28
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30052..31335)
DNA (1284bp) protein (428aa)
Uncharacterized protein n=2 Tax=Bifidobacterium breve RepID=S2ZFM0_BIFBR
Permease MFS superfamily
Uncharacterized protein {ECO:0000313|EMBL:EPD75151.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L2_022_103G1_scaffold_325_29
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


31734..32363
DNA (630bp) protein (210aa)
50S ribosomal protein L25 n=6 Tax=Bifidobacterium breve RepID=F6C9N9_BIFBA
LSU ribosomal protein L25P
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L2_022_103G1_scaffold_325_30
Bifidobacterium reuteri, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32587..32724
DNA (138bp) protein (46aa)
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:KFI87108.1}; EC=2.6.1.42 {ECO:0000313|EMBL:KFI87108.1};; TaxID=1437610 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium reuteri DSM 23975.;"
Branched-chain-amino-acid transaminase n=6 Tax=Bifidobacterium breve RepID=F6C9N8_BIFBA
Branched-chain amino acid aminotransferase
Displaying 30 items

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