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L2_022_103G1_scaffold_423

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_022_103G1_scaffold_423_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..190
DNA (189bp) protein (63aa)
Putative conjugative transposon protein Tn1549-like, CTn4-Orf25 n=9 Tax=Clostridium difficile RepID=Q18AV2_CLOD6
conjugative transposon protein
Putative conjugative transposon proteinTn1549-like, CTn4-Orf25 {ECO:0000313|EMBL:CEJ97662.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_022_103G1_scaffold_423_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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183..875
DNA (693bp) protein (231aa)
Two-component response regulator,Tn1549-like,CTn4-Orf26 n=7 Tax=Clostridium difficile RepID=Q18AV3_CLOD6
two-component response regulator
Two-component response regulator {ECO:0000313|EMBL:CKG93606.1}; Two-component responseregulator,Tn1549-like,CTn4-Orf26 {ECO:0000313|EMBL:CEJ97661.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_022_103G1_scaffold_423_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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882..1799
DNA (918bp) protein (306aa)
Sensor protein {ECO:0000313|EMBL:CKG93581.1}; EC=2.7.13.3 {ECO:0000313|EMBL:CKG93581.1};; Two-component sensor histidinekinase,Tn1549-like, CTn4-Orf27 {ECO:0000313|EMBL:CEJ97660.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Two-component sensor histidine kinase,Tn1549-like, CTn4-Orf27 n=16 Tax=Clostridium difficile RepID=Q18AU8_CLOD6
Two-component sensor histidinekinase,Tn1549-like, CTn4-Orf27
L2_022_103G1_scaffold_423_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1936..2862
DNA (927bp) protein (309aa)
multidrug family ABC transporter ATP-binding protein (EC:3.6.3.-)
ABC-type transport system, multidrug-family ATP-binding protein Tn1549-like, CTn4-Orf28 {ECO:0000313|EMBL:CAJ67941.1}; EC=3.6.3.- {ECO:0000313|EMBL:CAJ67941.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
ABC transporter family protein n=8 Tax=Clostridium difficile RepID=T3ES46_CLODI
L2_022_103G1_scaffold_423_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2855..3664
DNA (810bp) protein (270aa)
lantibiotic ABC transporter permease n=1 Tax=Clostridium difficile RepID=UPI00036FFE4A
ABC-type transport system, multidrug-familypermease Tn1549-like, CTn4-Orf29
ABC-type transport system, multidrug-family permease Tn1549-like, CTn4-Orf29 {ECO:0000313|EMBL:CAJ67940.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_022_103G1_scaffold_423_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3670..4443
DNA (774bp) protein (258aa)
lantibiotic ABC transporter permease n=1 Tax=Clostridium difficile RepID=UPI00017F54FC
ABC-type transport system, multidrug-familypermease Tn1549-like, CTn4-Orf30
ABC-type transport system, multidrug-family permease Tn1549-like, CTn4-Orf30 {ECO:0000313|EMBL:CAJ67939.2}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_022_103G1_scaffold_423_7
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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4911..5351
DNA (441bp) protein (147aa)
RNA polymerase sigma factor, sigma-70 family protein n=6 Tax=Clostridium difficile RepID=T3NCC7_CLODI
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog {ECO:0000313|EMBL:CBL26608.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L2_022_103G1_scaffold_423_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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5332..5589
DNA (258bp) protein (86aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=C7GF87_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEU99526.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L2_022_103G1_scaffold_423_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6008..6211
DNA (204bp) protein (68aa)
Excisionase Tn1549-like, CTn4-Orf33 n=9 Tax=Clostridiales RepID=Q18AU7_CLOD6
xis; excisionase
Excisionase Tn1549-like, CTn4-Orf33 {ECO:0000313|EMBL:CEJ97654.1}; Excisionase from transposon Tn916 {ECO:0000313|EMBL:CKG93453.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_022_103G1_scaffold_423_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6291..7484
DNA (1194bp) protein (398aa)
Transposase Int-Tn n=1 Tax=Clostridium difficile P28 RepID=T4P7D1_CLODI
Transposase Int-Tn {ECO:0000313|EMBL:EQJ63604.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Site-specific recombinase XerD
L2_022_103G1_scaffold_423_11
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7880..10303)
DNA (2424bp) protein (808aa)
Response regulator receiver domain protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CHS6_9CLOT
Response regulator receiver domain protein {ECO:0000313|EMBL:ERI66886.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
hypothetical protein
L2_022_103G1_scaffold_423_12
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10566..12029
DNA (1464bp) protein (488aa)
Transcriptional regulator, GntR family n=1 Tax=Clostridium sp. KLE 1755 RepID=U2AM21_9CLOT
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ERI66884.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
hypothetical protein
L2_022_103G1_scaffold_423_13
Parabacteroides sp. CAG:409, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(12022..13827)
DNA (1806bp) protein (602aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI00036E0468
Uncharacterized protein {ECO:0000313|EMBL:CDE63647.1}; TaxID=1262913 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:409.;"
alpha-amylase
L2_022_103G1_scaffold_423_14
Oribacterium sp. oral taxon 108, Oribacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13853..15811)
DNA (1959bp) protein (653aa)
Uncharacterized protein n=1 Tax=Oribacterium sp. oral taxon 108 str. F0425 RepID=F5T8N0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGL37132.1}; TaxID=904296 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Oribacterium.;" source="Oribacterium sp. oral taxon 108 str. F0425.;"
dextranase
L2_022_103G1_scaffold_423_15
Bacillus nealsonii, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(15891..16784)
DNA (894bp) protein (298aa)
Sugar ABC transporter permease n=1 Tax=Bacillus nealsonii AAU1 RepID=R9BWG9_9BACI
Sugar ABC transporter permease {ECO:0000313|EMBL:EOR21479.1}; TaxID=1202533 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus nealsonii AAU1.;"
lplC9; protein lplC
L2_022_103G1_scaffold_423_16
Paenibacillus sp. MAEPY2, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(16819..17742)
DNA (924bp) protein (308aa)
Sugar ABC transporter permease n=1 Tax=Paenibacillus polymyxa CR1 RepID=V5WWV3_PAEPO
Sugar ABC transporter permease {ECO:0000313|EMBL:KGP77645.1}; TaxID=1395587 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. MAEPY2.;"
sugar ABC transporter permease
L2_022_103G1_scaffold_423_17
Paenibacillus sp. FSL R5-192, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(17816..19492)
DNA (1677bp) protein (559aa)
ABC transporter n=1 Tax=Paenibacillus polymyxa CR1 RepID=V5WX95_PAEPO
Contig015, whole genome shotgun sequence {ECO:0000313|EMBL:ETT36195.1}; TaxID=1226754 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL R5-192.;"
ABC transporter
L2_022_103G1_scaffold_423_18
Bacillus nealsonii, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19878..20987
DNA (1110bp) protein (370aa)
Response regulator n=1 Tax=Bacillus nealsonii AAU1 RepID=R9C2N4_9BACI
Response regulator {ECO:0000313|EMBL:EOR21476.1}; TaxID=1202533 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus nealsonii AAU1.;"
two-component system response regulator YesN
L2_022_103G1_scaffold_423_19
Oceanobacillus oncorhynchi, Oceanobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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21004..22716
DNA (1713bp) protein (571aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=545501 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Oceanobacillus.;" source="Oceanobacillus oncorhynchi.;"
two component system histidine kinase (EC:2.7.13.3)
hypothetical protein n=1 Tax=Amphibacillus jilinensis RepID=UPI0002D85973
L2_022_103G1_scaffold_423_20
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22849..23541
DNA (693bp) protein (231aa)
Putative sensory transduction protein RegX3 n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CCA6_9CLOT
Putative sensory transduction protein RegX3 {ECO:0000313|EMBL:ERI66882.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L2_022_103G1_scaffold_423_21
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23538..24479
DNA (942bp) protein (314aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CHS0_9CLOT
Signal transduction histidine kinase
L2_022_103G1_scaffold_423_22
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24664..25575
DNA (912bp) protein (304aa)
Putative bacitracin ABC transporter, ATP-binding protein BcrA n=1 Tax=Clostridium sp. KLE 1755 RepID=U2B3T0_9CLOT
Putative bacitracin ABC transporter, ATP-binding protein BcrA {ECO:0000313|EMBL:ERI66880.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
ABC-type multidrug transport system, ATPase component
L2_022_103G1_scaffold_423_23
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25581..25865
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2AM16_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI66879.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
hypothetical protein
Displaying 23 items

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