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L2_022_366G1_scaffold_297

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Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_022_366G1_scaffold_297_1
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..255
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WFN5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD08220.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
Site-specific recombinase XerD
L2_022_366G1_scaffold_297_2
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

441..1001
DNA (561bp) protein (187aa)
Transcription antiterminator LicT n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FK14_9CLOT
Transcription antiterminator LicT {ECO:0000313|EMBL:EEA83626.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
bglg family transcriptional antiterminator
L2_022_366G1_scaffold_297_3
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1072..3030
DNA (1959bp) protein (653aa)
PTS system, beta-glucoside-specific, IIABC component {ECO:0000313|EMBL:EEA83625.1}; EC=2.7.1.69 {ECO:0000313|EMBL:EEA83625.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
PTS system, beta-glucoside-specific, IIABC component n=2 Tax=Clostridium RepID=B6FK13_9CLOT
PTS system beta-glucoside-specific IIA component, Glc family (TC 4.A.1.2.5)/PTS system beta-glucoside-specific IIB component, Glc family (TC 4.A.1.2.5)/PTS system beta-glucoside-specific IIC component, Glc family (TC 4.A.1.2.5)
L2_022_366G1_scaffold_297_4
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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3053..4504
DNA (1452bp) protein (484aa)
Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosid ase (EC:3.2.1.21)
Glycosyl hydrolase, family 1 n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FK12_9CLOT
Glycosyl hydrolase, family 1 {ECO:0000313|EMBL:EEA83624.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_022_366G1_scaffold_297_5
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4896..6272
DNA (1377bp) protein (459aa)
Tryptophan synthase {ECO:0000256|SAAS:SAAS00015859}; EC=4.2.1.20 {ECO:0000256|SAAS:SAAS00015859};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
tryptophan synthase subunit beta (EC:4.2.1.20)
Pyridoxal-phosphate dependent TrpB-like enzyme n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FK10_9CLOT
L2_022_366G1_scaffold_297_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6314..6535)
DNA (222bp) protein (74aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FK09_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23548.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Predicted transcriptional regulator
L2_022_366G1_scaffold_297_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6664..8949
DNA (2286bp) protein (762aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PS51_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23549.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Two-component sensor histidine kinase
L2_022_366G1_scaffold_297_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8924..9091
DNA (168bp) protein (56aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FK07_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23550.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
winged helix family two component transcriptional regulator
L2_022_366G1_scaffold_297_9
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9212..10525
DNA (1314bp) protein (438aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PYN9_9CLOT
Putative permease {ECO:0000313|EMBL:EEA83618.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
uracil-xanthine permease
L2_022_366G1_scaffold_297_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10662..11549
DNA (888bp) protein (296aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Superfamily I DNA and RNA helicases (EC:3.6.1.-)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FK05_9CLOT
L2_022_366G1_scaffold_297_11
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11586..12689
DNA (1104bp) protein (368aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Superfamily I DNA and RNA helicases (EC:3.6.1.-)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FK05_9CLOT
L2_022_366G1_scaffold_297_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12710..13690
DNA (981bp) protein (327aa)
Lysophospholipase (EC:3.1.1.5)
Hydrolase, alpha/beta domain protein n=2 Tax=Clostridium RepID=B6FK04_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23553.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_022_366G1_scaffold_297_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13710..14759
DNA (1050bp) protein (350aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
S-adenosyl-methyltransferase MraW (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Clostridium nexile CAG:348 RepID=R6PS53_9CLOT
L2_022_366G1_scaffold_297_14
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14866..16092
DNA (1227bp) protein (409aa)
4Fe-4S binding domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FK01_9CLOT
4Fe-4S binding domain protein {ECO:0000313|EMBL:EEA83695.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hydrogenase large subunit domain-containing protein
L2_022_366G1_scaffold_297_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16178..17347
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PYP2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23556.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
FliB family protein
L2_022_366G1_scaffold_297_16
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17359..18573
DNA (1215bp) protein (405aa)
Exonuclease SbcCD, D subunit n=2 Tax=Clostridium RepID=B6FJZ9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23557.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
sbcD; exonuclease SbcD
L2_022_366G1_scaffold_297_17
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18560..21640
DNA (3081bp) protein (1027aa)
Exodeoxyribonuclease I subunit C (EC:3.1.11.1)
Exonuclease SbcCD, C subunit n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FJZ8_9CLOT
Exonuclease SbcCD, C subunit {ECO:0000313|EMBL:EEA83692.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_022_366G1_scaffold_297_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21716..24400
DNA (2685bp) protein (895aa)
ATPase, P-type (transporting), HAD superfamily, subfamily IC (EC:3.6.3.8)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PS58_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23559.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_022_366G1_scaffold_297_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24443..25720
DNA (1278bp) protein (426aa)
UPF0597 protein CLONEX_00438 n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FJZ6_9CLOT
UPF0597 protein CLONEX_00438 {ECO:0000256|HAMAP-Rule:MF_01845}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_022_366G1_scaffold_297_20
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25761..26951
DNA (1191bp) protein (397aa)
Transporter, dicarboxylate/amino acid:cation Na+/H+ symporter family protein n=2 Tax=Clostridium RepID=B6FJZ5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23561.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
solute carrier family 1 (glial high affinity glutamate transporter), member 2
L2_022_366G1_scaffold_297_21
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27154..27717
DNA (564bp) protein (188aa)
Putative manganese efflux pump MntP n=2 Tax=Clostridium RepID=B6FJZ4_9CLOT
Putative manganese efflux pump MntP {ECO:0000256|HAMAP-Rule:MF_01521}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_022_366G1_scaffold_297_22
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27793..28746
DNA (954bp) protein (318aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
[LSU ribosomal protein L11P]-lysine N-methyltransferase (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase n=2 Tax=Clostridium RepID=B6FJZ3_9CLOT
L2_022_366G1_scaffold_297_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28757..29494
DNA (738bp) protein (246aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
RNA methyltransferase, RsmE family (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase E n=2 Tax=Clostridium RepID=B6FJZ2_9CLOT
L2_022_366G1_scaffold_297_24
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29537..30694
DNA (1158bp) protein (386aa)
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes (EC:2.8.1.7)
Aminotransferase, class V n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FJZ1_9CLOT
Aminotransferase, class V {ECO:0000313|EMBL:EEA83685.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_022_366G1_scaffold_297_25
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30698..31918
DNA (1221bp) protein (407aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Probable tRNA sulfurtransferase n=2 Tax=Clostridium RepID=B6FJZ0_9CLOT
thiazole biosynthesis/tRNA modification protein ThiI
L2_022_366G1_scaffold_297_26
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32016..32249)
DNA (234bp) protein (78aa)
PTS HPr component phosphorylation site n=2 Tax=Clostridium RepID=B6FJY9_9CLOT
PTS HPr component phosphorylation site {ECO:0000313|EMBL:EEA83683.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Phosphotransferase system, HPr-related proteins
L2_022_366G1_scaffold_297_27
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32389..33681
DNA (1293bp) protein (431aa)
tRNA methylthiotransferase YqeV n=2 Tax=Clostridium RepID=B6FJY8_9CLOT
tRNA methylthiotransferase YqeV {ECO:0000313|EMBL:EEA83682.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
MiaB-like tRNA modifying enzyme
L2_022_366G1_scaffold_297_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33739..34002
DNA (264bp) protein (88aa)
UPF0297 protein CLONEX_00429 n=2 Tax=Clostridium RepID=B6FJY7_9CLOT
UPF0297 protein CLONEX_00429 {ECO:0000256|HAMAP-Rule:MF_01507}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_022_366G1_scaffold_297_29
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34010..34441
DNA (432bp) protein (144aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Putative Holliday junction resolvase n=2 Tax=Clostridium RepID=B6FJY6_9CLOT
conserved hypothetical protein TIGR00250
L2_022_366G1_scaffold_297_30
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34468..34728
DNA (261bp) protein (87aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FJY5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23571.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Protein of unknown function (DUF1292).
Displaying items 1-30 of 32 in total

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