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L2_022_366G1_scaffold_342

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_022_366G1_scaffold_342_1
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17..1435
DNA (1419bp) protein (473aa)
RNA polymerase sigma factor SigA n=4 Tax=Bifidobacterium breve RepID=D4BS84_BIFBR
hrdB; RNA polymerase principal sigma factor hrdB
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L2_022_366G1_scaffold_342_2
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1562..3913
DNA (2352bp) protein (784aa)
DNA gyrase subunit B n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9Y182_BIFBU
DNA gyrase subunit B {ECO:0000313|EMBL:AHJ19537.1}; TaxID=1385940 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCM 7019.;"
DNA gyrase subunit B
L2_022_366G1_scaffold_342_3
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4080..5288
DNA (1209bp) protein (403aa)
Transporter, major facilitator family protein n=5 Tax=Bifidobacterium breve RepID=F6C923_BIFBA
Multidrug resistance protein, MSF member
Multidrug resistance protein, MSF member {ECO:0000313|EMBL:AHJ21337.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L2_022_366G1_scaffold_342_4
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5332..6324
DNA (993bp) protein (331aa)
Ribokinase, PfkB family n=2 Tax=Bifidobacterium breve RepID=H3KZL1_BIFBR
putative ribokinase
Putative ribokinase {ECO:0000313|EMBL:AEF27979.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L2_022_366G1_scaffold_342_5
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6488..11569
DNA (5082bp) protein (1694aa)
DEAD/DEAH box helicase n=1 Tax=Bifidobacterium breve (strain ACS-071-V-Sch8b) RepID=F6C926_BIFBA
DEAD/DEAH box helicase {ECO:0000313|EMBL:AEF26429.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
DEAD/DEAH box helicase
L2_022_366G1_scaffold_342_6
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12454..13413
DNA (960bp) protein (320aa)
Uncharacterized protein n=3 Tax=Bifidobacterium breve RepID=D4BS91_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:EFE88304.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
Hypothetical protein
L2_022_366G1_scaffold_342_7
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13942..14145
DNA (204bp) protein (68aa)
hypothetical protein n=1 Tax=Bifidobacterium breve RepID=UPI000365924D
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHJ21330.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L2_022_366G1_scaffold_342_8
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14233..16953)
DNA (2721bp) protein (907aa)
DNA topoisomerase (ATP-hydrolyzing) {ECO:0000256|SAAS:SAAS00075954}; EC=5.99.1.3 {ECO:0000256|SAAS:SAAS00075954};; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
DNA gyrase/topoisomerase IV, A subunit n=2 Tax=Bifidobacterium breve RepID=F6C929_BIFBA
DNA gyrase subunit A
L2_022_366G1_scaffold_342_9
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17185..18447
DNA (1263bp) protein (421aa)
Type I phosphodiesterase / nucleotide pyrophosphatase family protein n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3KZL6_BIFBR
Nucleotide pyrophosphatase
Nucleotide pyrophosphatase {ECO:0000313|EMBL:AHJ21328.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L2_022_366G1_scaffold_342_10
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18553..19626)
DNA (1074bp) protein (358aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve (strain ACS-071-V-Sch8b) RepID=F6C931_BIFBA
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEF27200.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L2_022_366G1_scaffold_342_11
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19778..20071
DNA (294bp) protein (98aa)
Uncharacterized protein n=5 Tax=Bifidobacterium breve RepID=F6C932_BIFBA
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFE88310.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L2_022_366G1_scaffold_342_12
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20071..20547
DNA (477bp) protein (159aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=4 Tax=Bifidobacterium breve RepID=F6C933_BIFBA
Deoxyuridine 5'-triphosphate nucleotidohydrolase
L2_022_366G1_scaffold_342_13
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20643..22967
DNA (2325bp) protein (775aa)
GTP diphosphokinase n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3KZM0_BIFBR
GTP pyrophosphokinase/Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase {ECO:0000313|EMBL:AHJ21324.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
GTP pyrophosphokinase/Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase
L2_022_366G1_scaffold_342_14
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23068..23607)
DNA (540bp) protein (180aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
Peptidyl-prolyl cis-trans isomerase n=2 Tax=Bifidobacterium breve RepID=F6C935_BIFBA
Peptidyl-prolyl cis-trans isomerase
L2_022_366G1_scaffold_342_15
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23723..24127)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GQJ2_BIFLS
putative secreted protein
Uncharacterized protein {ECO:0000313|EMBL:EPD75491.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L2_022_366G1_scaffold_342_16
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24179..24277)
DNA (99bp) protein (33aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=S2ZZP5_BIFBR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EPD75492.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L2_022_366G1_scaffold_342_17
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24463..25776
DNA (1314bp) protein (438aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZFG7_BIFBR
Hypothetical protein, contains HipA-like C-terminal domain
Uncharacterized protein {ECO:0000313|EMBL:EPD75493.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L2_022_366G1_scaffold_342_18
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25837..26679
DNA (843bp) protein (281aa)
Fic family protein n=1 Tax=Bifidobacterium breve DSM 20213 = JCM 1192 RepID=D4BSF1_BIFBR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAR00152.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L2_022_366G1_scaffold_342_19
unknown

Not on your lists

comp(27003..27176)
DNA (174bp) protein (58aa)
hypothetical protein
L2_022_366G1_scaffold_342_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27644..28330
DNA (687bp) protein (229aa)
4'-phosphopantetheinyl transferase family protein n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2CWH7_BIFBR
4'-phosphopantetheinyl transferase {ECO:0000313|EMBL:KHD94873.1}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
Phosphopantetheinyl transferase
L2_022_366G1_scaffold_342_21
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28234..28869)
DNA (636bp) protein (212aa)
TetR-type transcriptional regulator n=2 Tax=Bifidobacterium RepID=D6ZXM6_BIFLJ
Transcriptional regulator, TetR family
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABE94917.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L2_022_366G1_scaffold_342_22
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28866..29120)
DNA (255bp) protein (85aa)
Multi-domain protein possibly involved in fatty acids or polyketide biosynthesis
Multi-domain protein possibly involved in fatty acids or polyketide biosynthesis {ECO:0000313|EMBL:AHJ19500.1}; TaxID=1385940 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCM 7019.;"
L2_022_366G1_scaffold_342_23
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29136..30704)
DNA (1569bp) protein (523aa)
Antiseptic resistance protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GES2_9BIFI
putative membrane spanning protein, possibly efflux system
Putative membrane spanning protein, possibly efflux system {ECO:0000313|EMBL:AHJ19501.1}; TaxID=1385940 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCM 7019.;"
L2_022_366G1_scaffold_342_24
Bifidobacterium ruminantium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31068..31700)
DNA (633bp) protein (211aa)
Integrase, catalytic region n=2 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GPP8_BIFLS
Integrase, catalytic region {ECO:0000313|EMBL:KFI90327.1}; TaxID=78346 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium ruminantium.;"
Integrase, catalytic region
Displaying 24 items

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