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L2_022_366G1_scaffold_375

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_022_366G1_scaffold_375_1
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

691..1131
DNA (441bp) protein (147aa)
RNA polymerase sigma factor, sigma-70 family protein n=6 Tax=Clostridium difficile RepID=T3NCC7_CLODI
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog {ECO:0000313|EMBL:CBL26608.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L2_022_366G1_scaffold_375_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1112..1369
DNA (258bp) protein (86aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=C7GF87_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEU99526.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L2_022_366G1_scaffold_375_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1788..1991
DNA (204bp) protein (68aa)
Excisionase Tn1549-like, CTn4-Orf33 n=9 Tax=Clostridiales RepID=Q18AU7_CLOD6
xis; excisionase
Excisionase Tn1549-like, CTn4-Orf33 {ECO:0000313|EMBL:CEJ97654.1}; Excisionase from transposon Tn916 {ECO:0000313|EMBL:CKG93453.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_022_366G1_scaffold_375_4
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2011..3264
DNA (1254bp) protein (418aa)
Integrase Tn1549-like, CTn4-Orf34 n=2 Tax=Clostridium difficile RepID=U3W6C3_CLODI
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EEU96301.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Site-specific recombinase XerD
L2_022_366G1_scaffold_375_5
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3660..6083)
DNA (2424bp) protein (808aa)
Response regulator receiver domain protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CHS6_9CLOT
Response regulator receiver domain protein {ECO:0000313|EMBL:ERI66886.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
hypothetical protein
L2_022_366G1_scaffold_375_6
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6346..7809
DNA (1464bp) protein (488aa)
Transcriptional regulator, GntR family n=1 Tax=Clostridium sp. KLE 1755 RepID=U2AM21_9CLOT
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ERI66884.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
hypothetical protein
L2_022_366G1_scaffold_375_7
Parabacteroides sp. CAG:409, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(7802..9607)
DNA (1806bp) protein (602aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI00036E0468
Uncharacterized protein {ECO:0000313|EMBL:CDE63647.1}; TaxID=1262913 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:409.;"
alpha-amylase
L2_022_366G1_scaffold_375_8
Oribacterium sp. oral taxon 108, Oribacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9633..11591)
DNA (1959bp) protein (653aa)
Uncharacterized protein n=1 Tax=Oribacterium sp. oral taxon 108 str. F0425 RepID=F5T8N0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGL37132.1}; TaxID=904296 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Oribacterium.;" source="Oribacterium sp. oral taxon 108 str. F0425.;"
dextranase
L2_022_366G1_scaffold_375_9
Bacillus nealsonii, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(11671..12564)
DNA (894bp) protein (298aa)
Sugar ABC transporter permease n=1 Tax=Bacillus nealsonii AAU1 RepID=R9BWG9_9BACI
Sugar ABC transporter permease {ECO:0000313|EMBL:EOR21479.1}; TaxID=1202533 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus nealsonii AAU1.;"
lplC9; protein lplC
L2_022_366G1_scaffold_375_10
Paenibacillus sp. MAEPY2, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12599..13522)
DNA (924bp) protein (308aa)
Sugar ABC transporter permease n=1 Tax=Paenibacillus polymyxa CR1 RepID=V5WWV3_PAEPO
Sugar ABC transporter permease {ECO:0000313|EMBL:KGP77645.1}; TaxID=1395587 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. MAEPY2.;"
sugar ABC transporter permease
L2_022_366G1_scaffold_375_11
Paenibacillus sp. FSL R5-192, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13596..15272)
DNA (1677bp) protein (559aa)
ABC transporter n=1 Tax=Paenibacillus polymyxa CR1 RepID=V5WX95_PAEPO
Contig015, whole genome shotgun sequence {ECO:0000313|EMBL:ETT36195.1}; TaxID=1226754 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL R5-192.;"
ABC transporter
L2_022_366G1_scaffold_375_12
Bacillus nealsonii, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15658..16767
DNA (1110bp) protein (370aa)
Response regulator n=1 Tax=Bacillus nealsonii AAU1 RepID=R9C2N4_9BACI
Response regulator {ECO:0000313|EMBL:EOR21476.1}; TaxID=1202533 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus nealsonii AAU1.;"
two-component system response regulator YesN
L2_022_366G1_scaffold_375_13
Oceanobacillus oncorhynchi, Oceanobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

16784..18496
DNA (1713bp) protein (571aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=545501 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Oceanobacillus.;" source="Oceanobacillus oncorhynchi.;"
two component system histidine kinase (EC:2.7.13.3)
hypothetical protein n=1 Tax=Amphibacillus jilinensis RepID=UPI0002D85973
L2_022_366G1_scaffold_375_14
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18629..19321
DNA (693bp) protein (231aa)
Putative sensory transduction protein RegX3 n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CCA6_9CLOT
Putative sensory transduction protein RegX3 {ECO:0000313|EMBL:ERI66882.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L2_022_366G1_scaffold_375_15
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19318..20259
DNA (942bp) protein (314aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CHS0_9CLOT
Signal transduction histidine kinase
L2_022_366G1_scaffold_375_16
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20444..21355
DNA (912bp) protein (304aa)
Putative bacitracin ABC transporter, ATP-binding protein BcrA n=1 Tax=Clostridium sp. KLE 1755 RepID=U2B3T0_9CLOT
Putative bacitracin ABC transporter, ATP-binding protein BcrA {ECO:0000313|EMBL:ERI66880.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
ABC-type multidrug transport system, ATPase component
L2_022_366G1_scaffold_375_17
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21361..22068
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2AM16_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI66879.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
hypothetical protein
L2_022_366G1_scaffold_375_18
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22191..23000)
DNA (810bp) protein (270aa)
Uncharacterized protein (Fragment) n=1 Tax=Clostridium sp. KLE 1755 RepID=U2B502_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI66878.1}; Flags: Fragment;; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
hypothetical protein
L2_022_366G1_scaffold_375_19
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22990..23475)
DNA (486bp) protein (162aa)
Sigma-70 region 2 n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CT05_9CLOT
Sigma-70 region 2 {ECO:0000313|EMBL:ERI72387.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
RNA polymerase sigma factor, sigma-70 family
L2_022_366G1_scaffold_375_20
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23518..23874)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2BKP0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI72388.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
L2_022_366G1_scaffold_375_21
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23978..25621)
DNA (1644bp) protein (548aa)
Uncharacterized protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2B2L8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI72389.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
hypothetical protein
L2_022_366G1_scaffold_375_22
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25645..25980)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2BJH5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI72390.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
hypothetical protein
L2_022_366G1_scaffold_375_23
Virgibacillus sp. SK37, Virgibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26199..27035)
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Paenibacillus terrigena RepID=UPI000374264A
sugar ABC transporter permease
Sugar ABC transporter permease {ECO:0000313|EMBL:AIF44580.1}; TaxID=403957 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Virgibacillus.;" source="Virgibacillus sp. SK37.;"
L2_022_366G1_scaffold_375_24
Virgibacillus sp. SK37, Virgibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27032..27916)
DNA (885bp) protein (295aa)
Multiple sugar transport system permease n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IWW5_9FIRM
sugar ABC transporter permease
Sugar ABC transporter permease {ECO:0000313|EMBL:AIF44581.1}; TaxID=403957 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Virgibacillus.;" source="Virgibacillus sp. SK37.;"
L2_022_366G1_scaffold_375_25
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27990..29351)
DNA (1362bp) protein (454aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9INM8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF38558.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L2_022_366G1_scaffold_375_26
Bacillus sp. B-jedd, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(29525..29752)
DNA (228bp) protein (76aa)
Two component transcriptional regulator, AraC family n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MV16_CLOSA
AraC family transcriptional regulator {ECO:0000313|EMBL:CEG26300.1}; TaxID=1476857 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sp. B-jedd.;"
hypothetical protein
Displaying 26 items

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