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L2_022_366G1_scaffold_580

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_022_366G1_scaffold_580_1
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(250..1110)
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDA2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77151.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
sugar ABC transporter permease
L2_022_366G1_scaffold_580_2
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1110..2162)
DNA (1053bp) protein (351aa)
Binding-protein-dependent transport system inner membrane component n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CG82_9FIRM
Binding-protein-dependent transport system inner membrane component {ECO:0000313|EMBL:CDD77076.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
sugar ABC transporter permease
L2_022_366G1_scaffold_580_3
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2319..3599)
DNA (1281bp) protein (427aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDA4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77153.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
L2_022_366G1_scaffold_580_4
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3995..4609)
DNA (615bp) protein (205aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JDA5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77154.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L2_022_366G1_scaffold_580_5
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4859..6031)
DNA (1173bp) protein (391aa)
Malic enzyme (EC:1.1.1.38)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDA6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77155.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L2_022_366G1_scaffold_580_6
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6241..7992)
DNA (1752bp) protein (584aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CGI7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77080.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L2_022_366G1_scaffold_580_7
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8053..8649)
DNA (597bp) protein (199aa)
RNA polymerase sigma-70 factor n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CG85_9FIRM
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:CDD77081.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
RNA polymerase sigma factor, sigma-70 family
L2_022_366G1_scaffold_580_8
unknown

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comp(8841..8981)
DNA (141bp) protein (47aa)

This feature has no annotations

L2_022_366G1_scaffold_580_9
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8968..9474)
DNA (507bp) protein (169aa)
phosphohydrolase n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002D43F4E
Uncharacterized protein {ECO:0000313|EMBL:EES77159.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
HD domain.
L2_022_366G1_scaffold_580_10
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9632..10789)
DNA (1158bp) protein (386aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CQQ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77160.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Uncharacterized flavoproteins
L2_022_366G1_scaffold_580_11
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11002..12042)
DNA (1041bp) protein (347aa)
ABC-type transport system n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CNG0_9FIRM
ABC-type transport system {ECO:0000313|EMBL:CDD79759.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
ATP-binding cassette subfamily C protein
L2_022_366G1_scaffold_580_12
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12039..12497)
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CPB9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79760.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L2_022_366G1_scaffold_580_13
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12488..12841)
DNA (354bp) protein (118aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JDB4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79762.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Nucleotidyltransferase domain.
L2_022_366G1_scaffold_580_14
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12999..13865)
DNA (867bp) protein (289aa)
Protein HflC n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDB5_9FIRM
Protein HflC {ECO:0000256|PIRNR:PIRNR005651}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L2_022_366G1_scaffold_580_15
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13951..14979)
DNA (1029bp) protein (343aa)
membrane protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0003117F8B
HflK protein {ECO:0000313|EMBL:EES77165.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
HflK protein
L2_022_366G1_scaffold_580_16
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15272..16099)
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CPC7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79770.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
xylose isomerase
L2_022_366G1_scaffold_580_17
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16109..16669)
DNA (561bp) protein (187aa)
3-hexulose-6-phosphate isomerase (EC:5.3.1.27)
3-hexulose-6-phosphate isomerase n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CQ59_9FIRM
3-hexulose-6-phosphate isomerase {ECO:0000313|EMBL:CDD79772.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L2_022_366G1_scaffold_580_18
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16702..17688)
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CQR3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79773.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
inner-membrane translocator
L2_022_366G1_scaffold_580_19
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17694..19514)
DNA (1821bp) protein (607aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CNG9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD79774.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
ABC transporter related protein
Displaying 19 items

View Taxonomy