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L2_022_366G1_scaffold_618

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_022_366G1_scaffold_618_1
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..217)
DNA (216bp) protein (72aa)
30S ribosomal protein S9 n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDL8_9FIRM
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
SSU ribosomal protein S9P
L2_022_366G1_scaffold_618_2
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(235..663)
DNA (429bp) protein (143aa)
50S ribosomal protein L13 n=2 Tax=Ruminococcus RepID=C6JDL9_9FIRM
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
LSU ribosomal protein L13P
L2_022_366G1_scaffold_618_3
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(992..1732)
DNA (741bp) protein (247aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
pseudouridylate synthase I (EC:5.4.99.12)
tRNA pseudouridine synthase A n=2 Tax=Ruminococcus RepID=C6JDM0_9FIRM
L2_022_366G1_scaffold_618_4
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1851..2654)
DNA (804bp) protein (268aa)
Energy-coupling factor transporter transmembrane protein EcfT n=2 Tax=Ruminococcus RepID=C6JDM1_9FIRM
Energy-coupling factor transporter transmembrane protein EcfT {ECO:0000256|HAMAP-Rule:MF_01461}; Short=ECF transporter T component EcfT {ECO:0000256|HAMAP-Rule:MF_01461};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
ABC-type cobalt transport system, permease component CbiQ and related transporters
L2_022_366G1_scaffold_618_5
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2651..3727)
DNA (1077bp) protein (359aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JDM2_9FIRM
ABC-type cobalt transport system, ATPase component
L2_022_366G1_scaffold_618_6
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3718..4563)
DNA (846bp) protein (282aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
cobalt ABC transporter ATP-binding protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002FB5BD9
ABC-type cobalt transport system, ATPase component
L2_022_366G1_scaffold_618_7
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4651..5256)
DNA (606bp) protein (202aa)
Probable GTP-binding protein EngB n=2 Tax=Ruminococcus RepID=C6JDM4_9FIRM
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
ribosome biogenesis GTP-binding protein YsxC/EngB
L2_022_366G1_scaffold_618_8
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5314..7626)
DNA (2313bp) protein (771aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
ATP-dependent protease La (EC:3.4.21.53)
Lon protease n=2 Tax=Ruminococcus RepID=C6JDM5_9FIRM
L2_022_366G1_scaffold_618_9
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7647..8963)
DNA (1317bp) protein (439aa)
ATP-dependent Clp protease ATP-binding subunit ClpX (EC:3.4.21.92)
ATP-dependent Clp protease ATP-binding subunit ClpX n=2 Tax=Ruminococcus RepID=C6JDM6_9FIRM
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L2_022_366G1_scaffold_618_10
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9039..9620)
DNA (582bp) protein (194aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
ATP-dependent Clp protease, proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=2 Tax=Ruminococcus RepID=C6JDM7_9FIRM
L2_022_366G1_scaffold_618_11
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9716..11002)
DNA (1287bp) protein (429aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
Trigger factor n=2 Tax=Ruminococcus RepID=C6JDM8_9FIRM
trigger factor
L2_022_366G1_scaffold_618_12
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11277..11837)
DNA (561bp) protein (187aa)
DJ-1 family protein n=2 Tax=Ruminococcus RepID=C6JDM9_9FIRM
DJ-1 family protein {ECO:0000313|EMBL:EES76778.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
DJ-1 family protein
L2_022_366G1_scaffold_618_13
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11988..13505)
DNA (1518bp) protein (506aa)
Amidohydrolase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDN0_9FIRM
Amidohydrolase {ECO:0000313|EMBL:EES76779.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
amidohydrolase
L2_022_366G1_scaffold_618_14
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13798..14253
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDN4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76783.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
adenylate cyclase
L2_022_366G1_scaffold_618_15
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14430..15224)
DNA (795bp) protein (265aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CGD5_9FIRM
L2_022_366G1_scaffold_618_16
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15357..15803)
DNA (447bp) protein (149aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160054}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
D-tyrosyl-tRNA(Tyr) deacylase (EC:3.1.-.-)
D-tyrosyl-tRNA(Tyr) deacylase n=2 Tax=Ruminococcus RepID=C6JDN6_9FIRM
L2_022_366G1_scaffold_618_17
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15923..17281)
DNA (1359bp) protein (453aa)
MATE efflux family protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDN7_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EES76786.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Na+-driven multidrug efflux pump
L2_022_366G1_scaffold_618_18
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17451..18356
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CHB1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD77132.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
AraC family transcriptional regulator
Displaying 18 items

View Taxonomy