ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 44.61 Longest contig: 384.01 Kbp Bin length: 66.20 Mbp GC content: 47.26 %

Contigs count: 14240 Features count: 72710 rRNAs count: 20 tRNAs count: 1010

Genome completeness

megabin RP 52 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 17 / 38 MC: 15

Displaying items 301-350 of 14240 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
L2_022_366G1_scaffold_12360 Species: Roseburia inulinivorans (50%)	2	1121 bp	40.59	7.63	100.62
L2_022_366G1_scaffold_12032 Species: [Clostridium] clostridioforme (50%)	2	1145 bp	50.57	3.80	100.61
L2_022_366G1_scaffold_3560 Species: Lachnospiraceae bacterium A2 (75%)	4	3003 bp	46.49	6.04	100.60
L2_022_366G1_scaffold_14167 Species: Klebsiella pneumoniae (100%)	2	1005 bp	59.80	4.78	100.60
L2_022_366G1_scaffold_14109 Species: Lachnospiraceae bacterium 3_1_57FAA_CT1 (100%)	2	1008 bp	49.21	1.79	100.59
L2_022_366G1_scaffold_14002	2	1014 bp	47.34	3.40	100.59
L2_022_366G1_scaffold_13937 Species: Peptoclostridium difficile (50%)	2	1017 bp	48.97	5.75	100.59
L2_022_366G1_scaffold_11471 Species: Alkaliphilus metalliredigens (50%)	2	1187 bp	30.50	3.29	100.59
L2_022_366G1_scaffold_13893 Species: Anaerostipes sp. CAG:276 (100%)	2	1020 bp	45.00	3.82	100.59
L2_022_366G1_scaffold_13900 Species: Clostridium sp. HGF2 (50%)	2	1020 bp	50.88	3.09	100.59
L2_022_366G1_scaffold_9574 Species: Clostridium sp. CAG:91 (100%)	2	1366 bp	49.19	4.72	100.59
L2_022_366G1_scaffold_11324 Species: Ethanoligenens harbinense (50%)	2	1199 bp	31.86	9.13	100.58
L2_022_366G1_scaffold_11224 Species: Clostridium sp. CAG:7 (100%)	2	1208 bp	53.06	6.95	100.58
L2_022_366G1_scaffold_11190 Species: Erysipelotrichaceae bacterium 2_2_44A (50%)	2	1211 bp	44.26	8.05	100.58
L2_022_366G1_scaffold_12921 Species: Alistipes sp. 627 (50%)	2	2076 bp	45.04	12.86	100.58
L2_022_366G1_scaffold_13588 Species: Oscillibacter sp. KLE 1745 (50%)	2	1038 bp	54.72	3.90	100.58
L2_022_366G1_scaffold_9425 Species: Roseburia intestinalis CAG:13 (50%)	2	1384 bp	42.92	4.12	100.58
L2_022_366G1_scaffold_13197 Species: Bifidobacterium longum (100%)	2	1062 bp	51.88	3.67	100.57
L2_022_366G1_scaffold_4443 Species: [Clostridium] spiroforme (100%)	2	2506 bp	28.77	6.17	100.56
L2_022_366G1_scaffold_5365 Species: Clostridium sp. ATCC 29733 (50%)	2	2151 bp	56.49	7.39	100.56
L2_022_366G1_scaffold_10665 Species: Ruminococcaceae bacterium 585-1 (100%)	2	1259 bp	58.22	5.60	100.56
L2_022_366G1_scaffold_7530 Order: Clostridiales (66.67%)	3	1644 bp	50.36	4.47	100.55
L2_022_366G1_scaffold_7468 Species: Bifidobacterium longum (50%)	2	1656 bp	38.83	4.53	100.54
L2_022_366G1_scaffold_10245 Species: [Clostridium] bolteae (50%)	2	1295 bp	54.52	3.24	100.54
L2_022_366G1_scaffold_12478 Species: [Clostridium] celerecrescens (50%)	2	1113 bp	53.64	5.39	100.54
L2_022_366G1_scaffold_10211 Species: Clostridium sp. CAG:91 (100%)	2	1301 bp	52.57	5.42	100.54
L2_022_366G1_scaffold_5065 Phylum: Firmicutes (60%)	5	2250 bp	26.71	6.00	100.53
L2_022_366G1_scaffold_12211 Species: Peptoclostridium difficile (66.67%)	3	1131 bp	45.71	3.45	100.53
L2_022_366G1_scaffold_8369 Species: Roseburia inulinivorans (100%)	3	1513 bp	42.17	4.96	100.53
L2_022_366G1_scaffold_9900 Species: Lachnospiraceae bacterium 7_1_58FAA (100%)	3	1331 bp	64.24	4.40	100.53
L2_022_366G1_scaffold_5540 Order: Clostridiales (66.67%)	3	2098 bp	54.29	15.01	100.52
L2_022_366G1_scaffold_9862 Species: Firmicutes bacterium CAG:65 (100%)	2	1337 bp	50.86	4.60	100.52
L2_022_366G1_scaffold_9792 Species: Clostridium sp. CAG:91 (100%)	2	1343 bp	50.26	5.47	100.52
L2_022_366G1_scaffold_6166 Species: [Clostridium] clostridioforme (50%)	2	1919 bp	51.33	4.69	100.52
L2_022_366G1_scaffold_11803	2	1161 bp	48.32	4.13	100.52
L2_022_366G1_scaffold_11811 Species: Subdoligranulum sp. 4_3_54A2FAA (100%)	2	1161 bp	61.41	3.10	100.52
L2_022_366G1_scaffold_11677 Species: Subdoligranulum sp. 4_3_54A2FAA (100%)	2	1170 bp	57.52	5.38	100.51
L2_022_366G1_scaffold_6844 Species: [Clostridium] spiroforme (100%)	3	1773 bp	28.71	4.82	100.51
L2_022_366G1_scaffold_7814 Species: Erysipelotrichaceae bacterium 6_1_45 (50%)	2	1597 bp	45.77	4.79	100.50
L2_022_366G1_scaffold_3087 Species: Ruminococcaceae bacterium 585-1 (50%)	2	3409 bp	65.65	5.76	100.50
L2_022_366G1_scaffold_14086 Species: Subdoligranulum sp. 4_3_54A2FAA (100%)	3	1009 bp	62.14	4.16	100.50
L2_022_366G1_scaffold_14100 Species: [Ruminococcus] gnavus (100%)	2	1009 bp	43.11	4.16	100.50
L2_022_366G1_scaffold_7695 Species: [Clostridium] innocuum (50%)	2	1618 bp	46.54	4.82	100.49
L2_022_366G1_scaffold_11139 Species: [Clostridium] innocuum (50%)	2	1215 bp	48.31	2.84	100.49
L2_022_366G1_scaffold_13989 Species: Eubacterium rectale (100%)	2	1015 bp	45.52	4.14	100.49
L2_022_366G1_scaffold_7641 Species: Clostridium clostridioforme CAG:132 (50%)	2	1627 bp	54.89	3.78	100.49
L2_022_366G1_scaffold_10837 Species: Lachnospiraceae bacterium A4 (50%)	2	1242 bp	38.00	3.86	100.48
L2_022_366G1_scaffold_13633 Species: Lachnospiraceae bacterium 2_1_46FAA (50%)	2	1036 bp	50.87	4.92	100.48
L2_022_366G1_scaffold_10783 Species: [Clostridium] asparagiforme (50%)	2	1248 bp	51.52	6.01	100.48
L2_022_366G1_scaffold_10724 Species: Clostridium sp. HGF2 (50%)	2	1254 bp	48.88	5.62	100.48

Displaying items 301-350 of 14240 in total

L2_022_366G1_public_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

L2_022_366G1_public_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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