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L2_023_000G1_scaffold_2019

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_023_000G1_scaffold_2019_1
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

105..782
DNA (678bp) protein (226aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PJE4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23660.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
cell wall hydrolase/autolysin
L2_023_000G1_scaffold_2019_2
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

812..2350
DNA (1539bp) protein (513aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PYX0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23661.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Sua5/YciO/YrdC/YwlC family protein
L2_023_000G1_scaffold_2019_3
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2331..2756
DNA (426bp) protein (142aa)
Ribose-5-phosphate isomerase B {ECO:0000313|EMBL:EEA81834.1}; EC=5.3.1.6 {ECO:0000313|EMBL:EEA81834.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ribose-5-phosphate isomerase (EC:5.3.1.6)
Ribose-5-phosphate isomerase B n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FQ55_9CLOT
L2_023_000G1_scaffold_2019_4
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2784..3413
DNA (630bp) protein (210aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Uracil phosphoribosyltransferase n=2 Tax=Clostridium RepID=B6FQ54_9CLOT
uracil phosphoribosyltransferase
L2_023_000G1_scaffold_2019_5
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3435..3923
DNA (489bp) protein (163aa)
Deoxycytidylate deaminase (EC:3.5.4.12)
Cytidine and deoxycytidylate deaminase zinc-binding region n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FQ53_9CLOT
Cytidine and deoxycytidylate deaminase zinc-binding region {ECO:0000313|EMBL:EEA81832.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_023_000G1_scaffold_2019_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3962..4180)
DNA (219bp) protein (73aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FQ52_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23665.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_023_000G1_scaffold_2019_7
Blautia sp. CAG:257, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4312..5025
DNA (714bp) protein (238aa)
Ethanolamine utilization protein n=1 Tax=Blautia sp. CAG:257 RepID=R5WST7_9FIRM
Ethanolamine utilization protein {ECO:0000313|EMBL:CDA06458.1}; TaxID=1262756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:257.;"
Ethanolamine utilization protein
L2_023_000G1_scaffold_2019_8
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5092..5304
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FQ51_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81830.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_023_000G1_scaffold_2019_9
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5469..6428
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FQ50_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81829.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_023_000G1_scaffold_2019_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6425..7624
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PH32_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23668.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Flp pilus assembly protein, ATPase CpaF
L2_023_000G1_scaffold_2019_11
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7581..8336
DNA (756bp) protein (252aa)
Bacterial type II secretion system domain protein F n=2 Tax=Clostridium RepID=B6FQ48_9CLOT
Bacterial type II secretion system domain protein F {ECO:0000313|EMBL:EEA81827.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Flp pilus assembly protein TadB
L2_023_000G1_scaffold_2019_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8339..9631
DNA (1293bp) protein (431aa)
Bacterial type II secretion system domain protein F n=2 Tax=Clostridium RepID=B6FQ47_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23670.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_023_000G1_scaffold_2019_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9663..9839
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PYX7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23671.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_023_000G1_scaffold_2019_14
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9853..11187
DNA (1335bp) protein (445aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QP00_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23672.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_023_000G1_scaffold_2019_15
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11209..12090
DNA (882bp) protein (294aa)
TadE-like protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FPW5_9CLOT
TadE-like protein {ECO:0000313|EMBL:EEA81940.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_023_000G1_scaffold_2019_16
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12078..12500
DNA (423bp) protein (141aa)
Peptidase, A24 family n=2 Tax=Clostridium RepID=B6FPW4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23674.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Type IV leader peptidase family.
L2_023_000G1_scaffold_2019_17
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12497..12907
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FPW3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81938.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_023_000G1_scaffold_2019_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12904..13626
DNA (723bp) protein (241aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FPW2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23676.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_023_000G1_scaffold_2019_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13683..14276
DNA (594bp) protein (198aa)
Peptidase, S54 family {ECO:0000313|EMBL:EEA81936.1}; EC=3.4.21.- {ECO:0000313|EMBL:EEA81936.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Peptidase, S54 family n=2 Tax=Clostridium RepID=B6FPW1_9CLOT
Uncharacterized membrane protein (homolog of Drosophila rhomboid)
L2_023_000G1_scaffold_2019_20
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14100..14900)
DNA (801bp) protein (267aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FPW0_9CLOT
His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
L2_023_000G1_scaffold_2019_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15026..15439
DNA (414bp) protein (138aa)
Protein hit n=2 Tax=Clostridium RepID=B6FPV9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23679.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases
L2_023_000G1_scaffold_2019_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15461..16027
DNA (567bp) protein (189aa)
Sigma-70 region 2 n=2 Tax=Clostridium RepID=B6FPV8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23680.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
RNA polymerase sigma factor, sigma-70 family
L2_023_000G1_scaffold_2019_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16080..17144)
DNA (1065bp) protein (355aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082867}; EC=2.4.1.227 {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082938};; Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase {ECO:0000256|HAMAP-Rule:MF_00033}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC:2.4.1.227)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase n=2 Tax=Clostridium RepID=B6FPV7_9CLOT
L2_023_000G1_scaffold_2019_24
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17279..18097
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FPV6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81931.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_023_000G1_scaffold_2019_25
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18164..18631
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FPV5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81930.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Displaying 25 items

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