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L2_023_000G1_scaffold_2032

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_023_000G1_scaffold_2032_1
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..539)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9N0N8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS73642.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family
L2_023_000G1_scaffold_2032_2
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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661..996
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IM45_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EMZ24606.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
Predicted transcriptional regulators
L2_023_000G1_scaffold_2032_3
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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1123..2016
DNA (894bp) protein (298aa)
Transporter, auxin efflux carrier (AEC) family protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FLC2_9CLOT
Transporter, auxin efflux carrier (AEC) family protein {ECO:0000313|EMBL:EEA83165.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
putative permease
L2_023_000G1_scaffold_2032_4
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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2552..3799
DNA (1248bp) protein (416aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
glyA; Serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase n=1 Tax=Dorea sp. CAG:105 RepID=R5CZP5_9FIRM
L2_023_000G1_scaffold_2032_5
Coprococcus comes, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3815..4903
DNA (1089bp) protein (363aa)
Aminomethyltransferase {ECO:0000256|HAMAP-Rule:MF_00259, ECO:0000256|RuleBase:RU003981}; EC=2.1.2.10 {ECO:0000256|HAMAP-Rule:MF_00259, ECO:0000256|RuleBase:RU003981};; Glycine cleavage system T protein {ECO:0000256|HAMAP-Rule:MF_00259}; TaxID=470146 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus comes ATCC 27758.;"
Aminomethyltransferase n=2 Tax=Coprococcus RepID=C0B8S6_9FIRM
glycine cleavage system T protein
L2_023_000G1_scaffold_2032_6
Dorea formicigenerans CAG:28, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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4925..5305
DNA (381bp) protein (127aa)
Glycine cleavage system H protein n=3 Tax=Dorea RepID=B0G706_9FIRM
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=1263073 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea formicigenerans CAG:28.;"
gcvH; glycine cleavage system protein H
L2_023_000G1_scaffold_2032_7
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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5326..6645
DNA (1320bp) protein (440aa)
Probable glycine dehydrogenase (decarboxylating) subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712, ECO:0000256|SAAS:SAAS00015358}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00712, ECO:0000256|SAAS:SAAS00022796};; Glycine cleavage system P-protein subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; Glycine decarboxylase subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; Glycine dehydrogenase (aminomethyl-transferring) subunit 1 {ECO:0000256|HAMAP-Rule:MF_00712}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
glycine dehydrogenase (EC:1.4.4.2)
Probable glycine dehydrogenase [decarboxylating] subunit 1 n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G707_9FIRM
L2_023_000G1_scaffold_2032_8
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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6639..8069
DNA (1431bp) protein (477aa)
Probable glycine dehydrogenase (decarboxylating) subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00713};; Glycine cleavage system P-protein subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; Glycine decarboxylase subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; Glycine dehydrogenase (aminomethyl-transferring) subunit 2 {ECO:0000256|HAMAP-Rule:MF_00713}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
glycine dehydrogenase subunit 2 (EC:1.4.4.2)
Probable glycine dehydrogenase (decarboxylating) subunit 2 n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BGG8_9FIRM
L2_023_000G1_scaffold_2032_9
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8081..9070
DNA (990bp) protein (330aa)
Lipoate--protein ligase {ECO:0000256|SAAS:SAAS00026637}; EC=2.7.7.63 {ECO:0000256|SAAS:SAAS00026637};; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
Lipoyltransferase and lipoate-protein ligase n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G709_9FIRM
hypothetical protein
L2_023_000G1_scaffold_2032_10
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9071..10477
DNA (1407bp) protein (469aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
Dihydrolipoyl dehydrogenase n=1 Tax=Dorea formicigenerans CAG:28 RepID=R6SF87_9FIRM
dihydrolipoamide dehydrogenase
L2_023_000G1_scaffold_2032_11
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10521..11210
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0048 RepID=S2ZHJ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD63429.1}; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
transcriptional regulator
L2_023_000G1_scaffold_2032_12
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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11444..12799
DNA (1356bp) protein (452aa)
glycine reductase complex component B subunit alpha (EC:1.21.4.2)
Betaine reductase complex component B subunit alpha n=1 Tax=Lachnospiraceae bacterium 9_1_43BFAA RepID=F3AMJ7_9FIRM
Betaine reductase complex component B subunit alpha {ECO:0000313|EMBL:EGG85577.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
L2_023_000G1_scaffold_2032_13
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12812..13855
DNA (1044bp) protein (348aa)
glycine reductase complex component B subunit gamma (EC:1.21.4.2)
Betaine reductase complex component B subunit beta n=1 Tax=Coprococcus sp. HPP0048 RepID=S2Z095_9FIRM
Betaine reductase complex component B subunit beta {ECO:0000313|EMBL:EPD63427.1}; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
L2_023_000G1_scaffold_2032_14
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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13883..14116
DNA (234bp) protein (78aa)
betaine reductase complex component B subunit gamma (EC:1.21.4.2)
Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase domain protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G1E0_9FIRM
Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase domain protein {ECO:0000313|EMBL:EDR48606.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
L2_023_000G1_scaffold_2032_15
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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14128..15621
DNA (1494bp) protein (498aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 6_1_37FAA RepID=E9RWL3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGC74428.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
choline/carnitine/betaine transport
L2_023_000G1_scaffold_2032_16
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15778..16404
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6JNJ8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB64378.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
hypothetical protein
L2_023_000G1_scaffold_2032_17
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16460..16978
DNA (519bp) protein (173aa)
putative acetyltransferase (EC:2.3.1.-)
Acetyltransferase, GNAT family n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C081_9CLOT
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EEG74218.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
L2_023_000G1_scaffold_2032_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17289..17711
DNA (423bp) protein (141aa)
30S ribosomal protein S12 n=2 Tax=Clostridium RepID=B6FLC5_9CLOT
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
SSU ribosomal protein S12P
L2_023_000G1_scaffold_2032_19
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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17849..18340
DNA (492bp) protein (164aa)
30S ribosomal protein S7 n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JL12_9FIRM
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
ribosomal protein S7, bacterial/organelle
L2_023_000G1_scaffold_2032_20
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18461..18787
DNA (327bp) protein (109aa)
Elongation factor G n=1 Tax=Clostridium sp. D5 RepID=F0YWN6_9CLOT
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
elongation factor G
Displaying 20 items

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