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L2_023_000G1_scaffold_2038

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_023_000G1_scaffold_2038_1
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

263..505
DNA (243bp) protein (81aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PSF5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23684.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_023_000G1_scaffold_2038_2
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(892..1359)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FPV5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81930.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_023_000G1_scaffold_2038_3
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1425..2243)
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FPV6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81931.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_023_000G1_scaffold_2038_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2378..3442
DNA (1065bp) protein (355aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082867}; EC=2.4.1.227 {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082938};; Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase {ECO:0000256|HAMAP-Rule:MF_00033}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC:2.4.1.227)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase n=2 Tax=Clostridium RepID=B6FPV7_9CLOT
L2_023_000G1_scaffold_2038_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3493..4059)
DNA (567bp) protein (189aa)
Sigma-70 region 2 n=2 Tax=Clostridium RepID=B6FPV8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23680.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
RNA polymerase sigma factor, sigma-70 family
L2_023_000G1_scaffold_2038_6
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4081..4494)
DNA (414bp) protein (138aa)
Protein hit n=2 Tax=Clostridium RepID=B6FPV9_9CLOT
Protein hit {ECO:0000313|EMBL:EEA81934.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases
L2_023_000G1_scaffold_2038_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4621..5358
DNA (738bp) protein (246aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PH40_9CLOT
His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
L2_023_000G1_scaffold_2038_8
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5245..5838)
DNA (594bp) protein (198aa)
Peptidase, S54 family {ECO:0000313|EMBL:EEA81936.1}; EC=3.4.21.- {ECO:0000313|EMBL:EEA81936.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Peptidase, S54 family n=2 Tax=Clostridium RepID=B6FPW1_9CLOT
Uncharacterized membrane protein (homolog of Drosophila rhomboid)
L2_023_000G1_scaffold_2038_9
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5896..6618)
DNA (723bp) protein (241aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FPW2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23676.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_023_000G1_scaffold_2038_10
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6641..7024)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FPW3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81938.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_023_000G1_scaffold_2038_11
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7021..7443)
DNA (423bp) protein (141aa)
Peptidase, A24 family n=2 Tax=Clostridium RepID=B6FPW4_9CLOT
Peptidase, A24 family {ECO:0000313|EMBL:EEA81939.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Type IV leader peptidase family.
L2_023_000G1_scaffold_2038_12
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7431..8318)
DNA (888bp) protein (296aa)
TadE-like protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FPW5_9CLOT
TadE-like protein {ECO:0000313|EMBL:EEA81940.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_023_000G1_scaffold_2038_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8333..9667)
DNA (1335bp) protein (445aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QP00_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23672.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_023_000G1_scaffold_2038_14
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9681..9857)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PYX7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23671.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_023_000G1_scaffold_2038_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9889..11181)
DNA (1293bp) protein (431aa)
Bacterial type II secretion system domain protein F n=2 Tax=Clostridium RepID=B6FQ47_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23670.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_023_000G1_scaffold_2038_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11185..11940)
DNA (756bp) protein (252aa)
Bacterial type II secretion system domain protein F n=2 Tax=Clostridium RepID=B6FQ48_9CLOT
Bacterial type II secretion system domain protein F {ECO:0000313|EMBL:EEA81827.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Flp pilus assembly protein TadB
L2_023_000G1_scaffold_2038_17
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11888..13096)
DNA (1209bp) protein (403aa)
Type II/IV secretion system protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FQ49_9CLOT
Type II/IV secretion system protein {ECO:0000313|EMBL:EEA81828.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Flp pilus assembly protein, ATPase CpaF
L2_023_000G1_scaffold_2038_18
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13093..14052)
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FQ50_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81829.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_023_000G1_scaffold_2038_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14216..14428)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FQ51_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81830.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
SigmaK-factor processing regulatory protein BofA.
L2_023_000G1_scaffold_2038_20
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14573..14791
DNA (219bp) protein (73aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FQ52_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23665.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_023_000G1_scaffold_2038_21
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14830..15318)
DNA (489bp) protein (163aa)
Deoxycytidylate deaminase (EC:3.5.4.12)
Cytidine and deoxycytidylate deaminase zinc-binding region n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FQ53_9CLOT
Cytidine and deoxycytidylate deaminase zinc-binding region {ECO:0000313|EMBL:EEA81832.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_023_000G1_scaffold_2038_22
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15340..15969)
DNA (630bp) protein (210aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Uracil phosphoribosyltransferase n=2 Tax=Clostridium RepID=B6FQ54_9CLOT
uracil phosphoribosyltransferase
L2_023_000G1_scaffold_2038_23
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15994..16419)
DNA (426bp) protein (142aa)
Ribose-5-phosphate isomerase B {ECO:0000313|EMBL:EEA81834.1}; EC=5.3.1.6 {ECO:0000313|EMBL:EEA81834.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ribose-5-phosphate isomerase (EC:5.3.1.6)
Ribose-5-phosphate isomerase B n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FQ55_9CLOT
L2_023_000G1_scaffold_2038_24
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16416..17999)
DNA (1584bp) protein (528aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PYX0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23661.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Sua5/YciO/YrdC/YwlC family protein
L2_023_000G1_scaffold_2038_25
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17969..18646)
DNA (678bp) protein (226aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PJE4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23660.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
cell wall hydrolase/autolysin
Displaying 25 items

View Taxonomy