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L2_023_000G1_scaffold_2040

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_023_000G1_scaffold_2040_1
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..95)
DNA (93bp) protein (31aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
DNA polymerase III subunit beta n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C869_9FIRM
L2_023_000G1_scaffold_2040_2
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(353..1669)
DNA (1317bp) protein (439aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C870_9FIRM
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
dnaA; chromosomal replication initiator protein DnaA
L2_023_000G1_scaffold_2040_3
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


2439..2573
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=4 Tax=Clostridiales RepID=A6NQD6_9FIRM
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
rpmH; 50S ribosomal protein L34
L2_023_000G1_scaffold_2040_4
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2668..3015
DNA (348bp) protein (116aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
rnpA; ribonuclease P protein component (EC:3.1.26.5)
Ribonuclease P protein component n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CJ11_9CLOT
L2_023_000G1_scaffold_2040_5
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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3016..3234
DNA (219bp) protein (73aa)
Putative membrane protein insertion efficiency factor n=3 Tax=Clostridiales RepID=G9YR05_9FIRM
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L2_023_000G1_scaffold_2040_6
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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3265..4689
DNA (1425bp) protein (475aa)
Membrane protein insertase, YidC/Oxa1 family n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YR06_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF57472.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L2_023_000G1_scaffold_2040_7
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4727..5488
DNA (762bp) protein (254aa)
R3H domain protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YR07_9FIRM
R3H domain protein {ECO:0000313|EMBL:EHM50555.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
Jag protein homolog
L2_023_000G1_scaffold_2040_8
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5580..6380
DNA (801bp) protein (267aa)
S4 domain protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CPJ3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGF57475.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L2_023_000G1_scaffold_2040_9
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6380..6586
DNA (207bp) protein (69aa)
UPF0291 protein HMPREF0372_01952 n=2 Tax=Clostridiales RepID=G9YR09_9FIRM
UPF0291 protein HMPREF9460_00114 {ECO:0000256|HAMAP-Rule:MF_01103}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L2_023_000G1_scaffold_2040_10
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6638..6907)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YR10_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF57477.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L2_023_000G1_scaffold_2040_11
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6904..7542)
DNA (639bp) protein (213aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=G9YR11_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO35260.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L2_023_000G1_scaffold_2040_12
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7668..9023
DNA (1356bp) protein (452aa)
MATE efflux family protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YR12_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EHM50560.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
hypothetical protein
L2_023_000G1_scaffold_2040_13
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9020..9400
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CPJ8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI69216.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L2_023_000G1_scaffold_2040_14
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9428..10195)
DNA (768bp) protein (256aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CJ21_9CLOT
Oxidoreductase, short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:ERI69217.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
short chain dehydrogenase/reductase
L2_023_000G1_scaffold_2040_15
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10374..10988
DNA (615bp) protein (205aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|RuleBase:RU003992}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|RuleBase:RU003992};; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
lexA; LexA repressor (EC:3.4.21.88)
LexA repressor n=3 Tax=Clostridiales RepID=G9YR17_9FIRM
L2_023_000G1_scaffold_2040_16
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11085..11273
DNA (189bp) protein (63aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=G9YR18_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM50566.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
hypothetical protein
L2_023_000G1_scaffold_2040_17
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11270..12022
DNA (753bp) protein (251aa)
Exodeoxyribonuclease III n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YR19_9FIRM
Exodeoxyribonuclease {ECO:0000313|EMBL:KGF57484.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
exodeoxyribonuclease III Xth
L2_023_000G1_scaffold_2040_18
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12083..13258)
DNA (1176bp) protein (392aa)
Stage II sporulation protein P n=2 Tax=Clostridiales RepID=G9YR20_9FIRM
Stage II sporulation protein P {ECO:0000313|EMBL:EHO35267.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
spoIIP; stage II sporulation protein P
L2_023_000G1_scaffold_2040_19
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13314..13868
DNA (555bp) protein (185aa)
Transcriptional regulator, MarR family n=2 Tax=Clostridiales RepID=G9YR21_9FIRM
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ERI80215.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L2_023_000G1_scaffold_2040_20
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13865..14776
DNA (912bp) protein (304aa)
DegV family EDD domain-containing protein n=2 Tax=Clostridiales RepID=H1C888_9FIRM
EDD domain protein, DegV family {ECO:0000313|EMBL:ERI80214.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
EDD domain protein, DegV family
L2_023_000G1_scaffold_2040_21
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15242..16573
DNA (1332bp) protein (444aa)
serine protease (EC:3.4.21.-)
Serine protease do-like HtrA family protein n=3 Tax=Clostridiales RepID=G9YR24_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO35270.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L2_023_000G1_scaffold_2040_22
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16831..17082)
DNA (252bp) protein (84aa)
Sporulation transcriptional regulator SpoIIID n=3 Tax=Clostridiales RepID=G9YKJ2_9FIRM
Sporulation transcriptional regulator SpoIIID {ECO:0000313|EMBL:ERI80210.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L2_023_000G1_scaffold_2040_23
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17156..18196)
DNA (1041bp) protein (347aa)
Transcriptional regulator, LacI family n=3 Tax=Clostridiales RepID=G9YKJ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO35272.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
Transcriptional regulators
L2_023_000G1_scaffold_2040_24
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18563..18745
DNA (183bp) protein (61aa)
Putative uncharacterized protein (Fragment) n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CJI0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO27190.1}; Flags: Fragment;; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
Uncharacterized conserved protein (DUF2088).
Displaying 24 items

View Taxonomy