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L2_023_000G1_scaffold_2256

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_023_000G1_scaffold_2256_1
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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35..814
DNA (780bp) protein (260aa)
FeS assembly ATPase SufC n=2 Tax=Bifidobacterium RepID=C0BT23_9BIFI
FeS assembly ATPase SufC {ECO:0000313|EMBL:EEG70524.1}; Putative ABC transporter ATP-binding component {ECO:0000313|EMBL:BAR03489.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
sufC; cysteine desulfurase
L2_023_000G1_scaffold_2256_2
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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811..2085
DNA (1275bp) protein (425aa)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506};; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
Cysteine desulfurase n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BT24_9BIFI
cysteine desulfurase
L2_023_000G1_scaffold_2256_3
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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2091..2642
DNA (552bp) protein (184aa)
SUF system FeS assembly protein, NifU family n=2 Tax=Bifidobacterium RepID=C0BT25_9BIFI
SUF system FeS assembly protein, NifU family {ECO:0000313|EMBL:EEG70526.1}; Uncharacterized protein {ECO:0000313|EMBL:BAR03491.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
nitrogen fixation protein NifU
L2_023_000G1_scaffold_2256_4
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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2786..3373
DNA (588bp) protein (196aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=C0BT27_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC14963.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
hypothetical protein
L2_023_000G1_scaffold_2256_5
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3570..4814)
DNA (1245bp) protein (415aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565}; EC=2.7.7.27 {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565};; ADP-glucose pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00624}; ADP-glucose synthase {ECO:0000256|HAMAP-Rule:MF_00624}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
Glucose-1-phosphate adenylyltransferase n=2 Tax=Bifidobacterium RepID=C0BT28_9BIFI
glucose-1-phosphate adenylyltransferase
L2_023_000G1_scaffold_2256_6
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4962..5864)
DNA (903bp) protein (301aa)
tRNA/rRNA methyltransferase (EC:2.1.1.66)
RNA methyltransferase, TrmH family n=2 Tax=Bifidobacterium RepID=C0BT29_9BIFI
Putative RNA methyltransferase {ECO:0000313|EMBL:BAR03494.1}; RNA methyltransferase, TrmH family {ECO:0000313|EMBL:EEG70530.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
L2_023_000G1_scaffold_2256_7
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6103..6900
DNA (798bp) protein (266aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
Ribosomal RNA small subunit methyltransferase E n=2 Tax=Bifidobacterium RepID=C0BT30_9BIFI
16S rRNA methyltransferase
L2_023_000G1_scaffold_2256_8
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6985..7320
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6PZ23_9BIFI
HIT family hydrolase {ECO:0000313|EMBL:KEF28361.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
HIT family hydrolase
L2_023_000G1_scaffold_2256_9
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7360..8499
DNA (1140bp) protein (380aa)
PhoH family protein n=2 Tax=Bifidobacterium RepID=C0BT32_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC14956.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
phosphate starvation protein PhoH
L2_023_000G1_scaffold_2256_10
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8496..9041
DNA (546bp) protein (182aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
Endoribonuclease YbeY n=2 Tax=Bifidobacterium RepID=C0BT33_9BIFI
heat-shock protein
L2_023_000G1_scaffold_2256_11
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9103..10512
DNA (1410bp) protein (470aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6PZ20_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC14952.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
membrane protein
L2_023_000G1_scaffold_2256_12
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10505..11503
DNA (999bp) protein (333aa)
GTPase Era n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XV42_9BIFI
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
GTPase Era
L2_023_000G1_scaffold_2256_13
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11707..13743)
DNA (2037bp) protein (679aa)
AMP-binding enzyme n=2 Tax=Bifidobacterium RepID=C0BT36_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC14947.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
AMP-binding protein
L2_023_000G1_scaffold_2256_14
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13980..15125
DNA (1146bp) protein (382aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=R6P2L0_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC14944.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
pntA; NAD(P) transhydrogenase subunit alpha part 1
L2_023_000G1_scaffold_2256_15
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15129..15434
DNA (306bp) protein (102aa)
NAD/NADP transhydrogenase alpha subunit-like protein (EC:1.6.1.2)
NAD/NADP transhydrogenase alpha subunit-like protein n=9 Tax=Bifidobacterium RepID=D2QA53_BIFDB
NAD(P) transhydrogenase alpha-2 subunit {ECO:0000313|EMBL:BAR01741.1}; Uncharacterized protein {ECO:0000313|EMBL:EEB21975.1}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
L2_023_000G1_scaffold_2256_16
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15435..16880
DNA (1446bp) protein (482aa)
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
NAD(P) transhydrogenase subunit beta n=2 Tax=Bifidobacterium RepID=C0BT39_9BIFI
NAD(P) transhydrogenase subunit beta
Displaying 16 items

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