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L2_023_000G1_scaffold_1008

Search features with annotation key words

Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_023_000G1_scaffold_1008_1
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..280)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Clostridium sp. M62/1 RepID=D4CFG7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFE11553.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
hypothetical protein
L2_023_000G1_scaffold_1008_2
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(261..491)
DNA (231bp) protein (77aa)
Putative uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14163 RepID=E7GUQ7_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA91478.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
L2_023_000G1_scaffold_1008_3
Mobiluncus curtisii, Mobiluncus, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

703..1566
DNA (864bp) protein (288aa)
Uncharacterized protein n=2 Tax=Mobiluncus curtisii RepID=D6ZFX1_MOBCV
pYieJ-like protein
Uncharacterized protein {ECO:0000313|EMBL:EFU80505.1}; TaxID=887326 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Mobiluncus.;" source="Mobiluncus curtisii ATCC 51333.;"
L2_023_000G1_scaffold_1008_4
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

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1608..2408
DNA (801bp) protein (267aa)
Helix-turn-helix n=2 Tax=root RepID=D7GUA6_9FIRM
Helix-turn-helix.
Helix-turn-helix {ECO:0000313|EMBL:CBL41398.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L2_023_000G1_scaffold_1008_5
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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2449..3264
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M361_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS65509.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
hypothetical protein
L2_023_000G1_scaffold_1008_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3791..5830)
DNA (2040bp) protein (680aa)
CRISPR-associated protein, Csm1 family n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L091_9FIRM
CRISPR-associated protein, Csm1 family {ECO:0000313|EMBL:CBL13031.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
CRISPR-associated protein, Csm1 family
L2_023_000G1_scaffold_1008_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5827..6573)
DNA (747bp) protein (249aa)
CRISPR-associated protein Cas6 n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L090_9FIRM
CRISPR-associated protein Cas6
CRISPR-associated protein Cas6 {ECO:0000313|EMBL:CBL13030.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_023_000G1_scaffold_1008_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6749..7354)
DNA (606bp) protein (202aa)
Fic family protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G6C9_9FIRM
Fic family protein {ECO:0000313|EMBL:EEV02638.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Protein involved in cell division
L2_023_000G1_scaffold_1008_9
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7388..7651)
DNA (264bp) protein (88aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=C7G6D0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA55984.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_023_000G1_scaffold_1008_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7682..8527)
DNA (846bp) protein (282aa)
rRNA methylases n=2 Tax=Roseburia RepID=D4KJH8_9FIRM
rRNA methylases
rRNA methylases {ECO:0000313|EMBL:CBL10508.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_023_000G1_scaffold_1008_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8622..9596)
DNA (975bp) protein (325aa)
6-phosphofructokinase (EC:2.7.1.11)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:0000256|HAMAP-Rule:MF_00339};; Phosphohexokinase {ECO:0000256|HAMAP-Rule:MF_00339}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
6-phosphofructokinase n=4 Tax=Roseburia RepID=D4KJH7_9FIRM
L2_023_000G1_scaffold_1008_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9659..13129)
DNA (3471bp) protein (1157aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170, ECO:0000313|EMBL:CBL13025.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
DNA polymerase III catalytic subunit, DnaE type (EC:2.7.7.7)
DNA polymerase III catalytic subunit, DnaE type n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L085_9FIRM
L2_023_000G1_scaffold_1008_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13248..15251)
DNA (2004bp) protein (668aa)
Pullulanase, type I {ECO:0000313|EMBL:CBL10489.1}; EC=3.2.1.41 {ECO:0000313|EMBL:CBL10489.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
pullulanase, type I (EC:3.2.1.41)
Pullulanase, type I n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KJF9_9FIRM
L2_023_000G1_scaffold_1008_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15358..17031)
DNA (1674bp) protein (558aa)
Glycosidases {ECO:0000313|EMBL:CBL10488.1}; EC=3.2.1.10 {ECO:0000313|EMBL:CBL10488.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Glycosidases (EC:3.2.1.10)
Glycosidases n=3 Tax=Roseburia RepID=D4KJF8_9FIRM
L2_023_000G1_scaffold_1008_15
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17043..19466)
DNA (2424bp) protein (808aa)
Alpha-glucosidases family 31 of glycosyl hydrolases n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AVR8_9FIRM
Alpha-glucosidases family 31 of glycosyl hydrolases {ECO:0000313|EMBL:CDA55978.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Alpha-glucosidases, family 31 of glycosyl hydrolases
L2_023_000G1_scaffold_1008_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19688..20728)
DNA (1041bp) protein (347aa)
Transcriptional regulators n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KJF1_9FIRM
Transcriptional regulators
Transcriptional regulators {ECO:0000313|EMBL:CBL10481.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_023_000G1_scaffold_1008_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20854..21495)
DNA (642bp) protein (214aa)
Beta-phosphoglucomutase {ECO:0000313|EMBL:EEV02601.1}; EC=5.4.2.6 {ECO:0000313|EMBL:EEV02601.1};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
beta-phosphoglucomutase (EC:5.4.2.6)
Beta-phosphoglucomutase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G6E5_9FIRM
L2_023_000G1_scaffold_1008_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21846..22697
DNA (852bp) protein (284aa)
Predicted esterase of the alpha-beta hydrolase superfamily n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KJE9_9FIRM
Predicted esterase of the alpha-beta hydrolase superfamily
Predicted esterase of the alpha-beta hydrolase superfamily {ECO:0000313|EMBL:CBL10479.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_023_000G1_scaffold_1008_19
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22730..24052
DNA (1323bp) protein (441aa)
Putative efflux protein, MATE family n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L077_9FIRM
putative efflux protein, MATE family
Putative efflux protein, MATE family {ECO:0000313|EMBL:CBL13017.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_023_000G1_scaffold_1008_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24224..26806)
DNA (2583bp) protein (861aa)
ATP-dependent chaperone ClpB n=2 Tax=Roseburia intestinalis RepID=D4KJE7_9FIRM
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
ATP-dependent chaperone ClpB
L2_023_000G1_scaffold_1008_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27043..28233)
DNA (1191bp) protein (397aa)
Basic membrane protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G6F1_9FIRM
Basic membrane protein {ECO:0000313|EMBL:EEV02607.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Bmp family protein
L2_023_000G1_scaffold_1008_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28235..30148)
DNA (1914bp) protein (638aa)
Uncharacterized domain HDIG n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KYE3_9FIRM
Uncharacterized domain HDIG {ECO:0000313|EMBL:CBL12383.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
uncharacterized domain HDIG
L2_023_000G1_scaffold_1008_23
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30172..31713)
DNA (1542bp) protein (514aa)
Two component regulator propeller n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KJA7_9FIRM
Two component regulator propeller.
HD domain protein {ECO:0000313|EMBL:CDA54231.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_023_000G1_scaffold_1008_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31987..32634
DNA (648bp) protein (216aa)
Formimidoyltetrahydrofolate cyclodeaminase (EC:3.5.4.9 4.3.1.4)
Formimidoyltetrahydrofolate cyclodeaminase {ECO:0000313|EMBL:CBL12382.1}; EC=3.5.4.9 {ECO:0000313|EMBL:CBL12382.1};; EC=4.3.1.4 {ECO:0000313|EMBL:CBL12382.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Formimidoyltetrahydrofolate cyclodeaminase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KYE2_9FIRM
L2_023_000G1_scaffold_1008_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32715..33578
DNA (864bp) protein (288aa)
methenyltetrahydrofolate cyclohydrolase/5,10-methylenetetrahydrofolate dehydrogenase (NADP+) (EC:1.5.1.5 3.5.4.9)
Bifunctional protein FolD n=3 Tax=Roseburia RepID=D4KYE1_9FIRM
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_023_000G1_scaffold_1008_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33761..35107)
DNA (1347bp) protein (449aa)
Predicted ATPase (AAA+ superfamily) n=2 Tax=Roseburia intestinalis RepID=D4KJA4_9FIRM
Predicted ATPase (AAA+ superfamily)
Predicted ATPase (AAA+ superfamily) {ECO:0000313|EMBL:CBL10434.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_023_000G1_scaffold_1008_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35306..37612)
DNA (2307bp) protein (769aa)
Mannose-6-phosphate isomerase, class I/beta-galactosidase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KYD8_9FIRM
Mannose-6-phosphate isomerase, class I/beta-galactosidase {ECO:0000313|EMBL:CBL12378.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
mannose-6-phosphate isomerase, class I/beta-galactosidase
L2_023_000G1_scaffold_1008_28
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37636..38754)
DNA (1119bp) protein (373aa)
Lysophospholipase L1 and related esterases n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BLG7_9FIRM
Lysophospholipase L1 and related esterases {ECO:0000313|EMBL:CDA54237.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Lysophospholipase L1 and related esterases
L2_023_000G1_scaffold_1008_29
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(39044..40093)
DNA (1050bp) protein (350aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AT85_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA54240.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L2_023_000G1_scaffold_1008_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40295..41317)
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G6G1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV02551.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Predicted glycosylase
Displaying items 1-30 of 71 in total

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