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L2_023_000G1_scaffold_12

Search features with annotation key words

Displaying items 1-30 of 205 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_023_000G1_scaffold_12_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1046..1204)
DNA (159bp) protein (53aa)
Uncharacterized protein n=97 Tax=Clostridium difficile RepID=G6C045_CLODI
putative phage protein
Putative phage protein {ECO:0000313|EMBL:CDS88387.1}; Uncharacterised protein {ECO:0000313|EMBL:CKH35199.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_023_000G1_scaffold_12_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1563..2933)
DNA (1371bp) protein (457aa)
Cell wall binding repeat 2 family protein n=7 Tax=Clostridium difficile RepID=T3HPR4_CLODI
Cell surface protein {ECO:0000313|EMBL:CDT33213.1}; Putative cell wall binding repeat 2 {ECO:0000313|EMBL:CDS88388.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
cwp29; Cell surface protein cwp29
L2_023_000G1_scaffold_12_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3147..4265
DNA (1119bp) protein (373aa)
Integrase n=3 Tax=Clostridium difficile RepID=Q182K7_CLOD6
Integrase {ECO:0000313|EMBL:CDS85246.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Integrase
L2_023_000G1_scaffold_12_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4582..5250)
DNA (669bp) protein (223aa)
VanZ like family protein n=18 Tax=Clostridium difficile RepID=T2VLH3_CLODI
VanZ like family protein {ECO:0000313|EMBL:EQE60788.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
hypothetical protein
L2_023_000G1_scaffold_12_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5346..5513)
DNA (168bp) protein (56aa)
Uncharacterized protein n=49 Tax=Clostridium difficile RepID=T2UPC6_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQE60793.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_023_000G1_scaffold_12_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(6101..8521)
DNA (2421bp) protein (807aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
Leucine--tRNA ligase n=146 Tax=Clostridium difficile RepID=SYL_CLOD6
leuS; leucyl-tRNA synthetase
L2_023_000G1_scaffold_12_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8875..9225)
DNA (351bp) protein (117aa)
Ribosomal silencing factor RsfS n=7 Tax=Clostridium difficile RepID=T2VKJ7_CLODI
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
hypothetical protein
L2_023_000G1_scaffold_12_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9342..9914)
DNA (573bp) protein (191aa)
Uncharacterized protein n=202 Tax=Clostridium difficile RepID=T3GG84_CLODC
hydrolase
Uncharacterized protein {ECO:0000313|EMBL:EQE60789.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_023_000G1_scaffold_12_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9915..10604)
DNA (690bp) protein (230aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
Probable nicotinate-nucleotide adenylyltransferase n=216 Tax=Clostridium difficile RepID=C9XMP6_CLODC
nicotinate-nucleotide adenylyltransferase
L2_023_000G1_scaffold_12_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10880..11518
DNA (639bp) protein (213aa)
Regulatory protein RecX n=181 Tax=Clostridium difficile RepID=RECX_CLOD6
recX; Regulatory protein RecX
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L2_023_000G1_scaffold_12_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11671..13674
DNA (2004bp) protein (668aa)
1,4-alpha-glucan branching enzyme {ECO:0000256|SAAS:SAAS00046836}; EC=2.4.1.18 {ECO:0000256|SAAS:SAAS00046836};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Alpha amylase, catalytic domain protein n=19 Tax=Clostridium difficile RepID=T2TEK5_CLODI
gbeA; glycogen branching enzyme
L2_023_000G1_scaffold_12_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13848..14489
DNA (642bp) protein (214aa)
Bacterial regulatory s, tetR family protein n=42 Tax=Clostridium difficile RepID=T3GEI0_CLODC
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EHJ24629.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
Transcriptional regulator, TetR family
L2_023_000G1_scaffold_12_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14600..15265
DNA (666bp) protein (222aa)
Uncharacterized protein n=118 Tax=Clostridium difficile RepID=T3GDK7_CLODC
Uncharacterized protein {ECO:0000313|EMBL:EQI80526.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
conserved hypothetical protein
L2_023_000G1_scaffold_12_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15442..15753)
DNA (312bp) protein (104aa)
Uncharacterized protein n=162 Tax=Clostridium difficile RepID=C9XMP9_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ24631.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_023_000G1_scaffold_12_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15831..16649)
DNA (819bp) protein (273aa)
Bacterial regulatory helix-turn-helix s, AraC family protein n=7 Tax=Clostridium difficile RepID=T3HL19_CLODI
Transcriptional regulator, AraC family {ECO:0000313|EMBL:CDT65732.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Transcriptional regulator, AraC family
L2_023_000G1_scaffold_12_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16749..17273)
DNA (525bp) protein (175aa)
ECF-type riboflavin transporter, S component family protein n=30 Tax=Clostridium difficile RepID=T3GEH2_CLODC
membrane protein
Putative membrane protein {ECO:0000313|EMBL:CAJ69418.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_023_000G1_scaffold_12_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17292..18434)
DNA (1143bp) protein (381aa)
Aminotransferase, alanine--glyoxylate transaminase {ECO:0000313|EMBL:CDT65716.1}; EC=2.6.1.- {ECO:0000313|EMBL:CDT65716.1};; Aminotransferase, class V {ECO:0000313|EMBL:CDS88417.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
alanine--glyoxylate transaminase (EC:2.6.1.-)
Aminotransferase class-V family protein n=31 Tax=Clostridium difficile RepID=T2TCE4_CLODI
L2_023_000G1_scaffold_12_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18714..21101)
DNA (2388bp) protein (796aa)
ABC-type transport system, permease n=29 Tax=Clostridium difficile RepID=U3WXM7_CLODI
ABC-type transport system, permease {ECO:0000313|EMBL:CCL22872.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
ABC-type transport system, permease
L2_023_000G1_scaffold_12_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21094..21777)
DNA (684bp) protein (228aa)
ABC transporter ATP-binding protein (EC:3.6.3.-)
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CKH35778.1}; EC=3.6.3.- {ECO:0000313|EMBL:CKH35778.1};; ABC-type transport system, ATP-binding protein {ECO:0000313|EMBL:CDT65700.1}; EC=3.6.3.- {ECO:0000313|EMBL:CDT65700.1};; Uncharacterized protein {ECO:0000313|EMBL:CDS88421.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ABC-type transport system, ATP-binding protein n=106 Tax=Clostridium difficile RepID=Q182M1_CLOD6
L2_023_000G1_scaffold_12_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21894..23204)
DNA (1311bp) protein (437aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
His Kinase A domain protein n=11 Tax=Clostridium difficile RepID=T2VM43_CLODI
two-component sensor histidine kinase
L2_023_000G1_scaffold_12_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23198..23926)
DNA (729bp) protein (243aa)
Two-component response regulator n=193 Tax=Clostridium difficile RepID=C9XMQ6_CLODC
two-component response regulator
Two-component response regulator {ECO:0000313|EMBL:CBE05735.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L2_023_000G1_scaffold_12_22
unknown

Not on your lists

24047..24247
DNA (201bp) protein (67aa)

This feature has no annotations

L2_023_000G1_scaffold_12_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24210..26051)
DNA (1842bp) protein (614aa)
Putative membrane-associated 5'-nucleotidase/phosphoesterase {ECO:0000313|EMBL:CDT65671.1}; EC=3.1.3.5 {ECO:0000313|EMBL:CDT65671.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
putative membrane-associated5'-nucleotidase/phosphoesterase (EC:3.1.3.5)
Calcineurin-like phosphoesterase family protein n=4 Tax=Clostridium difficile RepID=T3HPT2_CLODI
L2_023_000G1_scaffold_12_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26264..27148)
DNA (885bp) protein (295aa)
Uncharacterized protein n=7 Tax=Clostridium difficile RepID=T2VLI9_CLODI
Putative lipoprotein {ECO:0000313|EMBL:CDS85215.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS88429.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
putative lipoprotein
L2_023_000G1_scaffold_12_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27356..28273
DNA (918bp) protein (306aa)
rnz; Ribonuclease Z (RNase Z) (tRNase Z) (tRNA 3endonuclease) (EC:3.1.26.11)
Ribonuclease Z {ECO:0000256|HAMAP-Rule:MF_01818}; Short=RNase Z {ECO:0000256|HAMAP-Rule:MF_01818};; EC=3.1.26.11 {ECO:0000256|HAMAP-Rule:MF_01818};; tRNA 3 endonuclease {ECO:0000256|HAMAP-Rule:MF_01818}; tRNase Z {ECO:0000256|HAMAP-Rule:MF_01818}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
Ribonuclease Z n=196 Tax=Clostridium difficile RepID=RNZ_CLOD6
L2_023_000G1_scaffold_12_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28415..29749)
DNA (1335bp) protein (445aa)
coenzyme A disulfide reductase (EC:1.8.1.14)
Pyridine nucleotide-disulfide oxidoreductase family protein n=109 Tax=Clostridium difficile RepID=T3GHY3_CLODC
Pyridine nucleotide-disulfide oxidoreductase family protein {ECO:0000313|EMBL:EQE60806.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_023_000G1_scaffold_12_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30090..31478
DNA (1389bp) protein (463aa)
Sodium:glutamate/aspartate symporter family n=12 Tax=Clostridium difficile RepID=Q182M8_CLOD6
Sodium:glutamate/aspartate symporter family
Sodium:glutamate/aspartate symporter family {ECO:0000313|EMBL:CAJ69428.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_023_000G1_scaffold_12_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31552..32760)
DNA (1209bp) protein (403aa)
Uncharacterized protein n=7 Tax=Clostridium difficile RepID=T2VPV9_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CDT65613.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
conserved hypothetical protein
L2_023_000G1_scaffold_12_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32775..34193)
DNA (1419bp) protein (473aa)
Putative membrane-bound 0-ACYL transferase,MBOAT family {ECO:0000313|EMBL:CCL22896.1}; EC=2.3.1.- {ECO:0000313|EMBL:CCL22896.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
membrane-bound O-acyl transferase (EC:2.3.1.-)
MBOAT, membrane-bound O-acyltransferase family protein n=87 Tax=Clostridium difficile RepID=T4ALQ2_CLODI
L2_023_000G1_scaffold_12_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34211..35287)
DNA (1077bp) protein (359aa)
Uncharacterized protein n=32 Tax=Clostridium difficile RepID=U4A6X1_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CDS88440.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
conserved hypothetical protein
Displaying items 1-30 of 205 in total

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