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L2_023_000G1_scaffold_88

Search features with annotation key words

Displaying items 1-30 of 118 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_023_000G1_scaffold_88_1
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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130..642
DNA (513bp) protein (171aa)
Shikimate kinase (EC:2.7.1.71)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Shikimate kinase n=4 Tax=Roseburia RepID=D4KP86_9FIRM
L2_023_000G1_scaffold_88_2
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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674..2236
DNA (1563bp) protein (521aa)
Membrane proteins related to metalloendopeptidases n=3 Tax=Roseburia RepID=D4KP87_9FIRM
Membrane proteins related to metalloendopeptidases
Membrane proteins related to metalloendopeptidases {ECO:0000313|EMBL:CDA56466.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_023_000G1_scaffold_88_3
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2391..3683
DNA (1293bp) protein (431aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=4 Tax=Roseburia RepID=D4KP88_9FIRM
L2_023_000G1_scaffold_88_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3713..3880
DNA (168bp) protein (56aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L2U1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL13931.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_023_000G1_scaffold_88_5
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3897..4637
DNA (741bp) protein (247aa)
Predicted membrane protein n=4 Tax=Roseburia RepID=D4KP90_9FIRM
Predicted membrane protein
Predicted membrane protein {ECO:0000313|EMBL:CDA56461.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_023_000G1_scaffold_88_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4676..5767)
DNA (1092bp) protein (364aa)
Uncharacterized domain HDIG n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L2U3_9FIRM
HDIG domain protein {ECO:0000313|EMBL:EEV01884.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
uncharacterized domain HDIG
L2_023_000G1_scaffold_88_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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6170..7351
DNA (1182bp) protein (394aa)
methionine adenosyltransferase (EC:2.5.1.6)
S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541}; EC=2.5.1.6 {ECO:0000256|RuleBase:RU000541};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
S-adenosylmethionine synthase n=3 Tax=Roseburia RepID=D4L2U4_9FIRM
L2_023_000G1_scaffold_88_8
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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7533..9020
DNA (1488bp) protein (496aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Signal transduction histidine kinase n=3 Tax=Roseburia RepID=D4KP93_9FIRM
Signal transduction histidine kinase
L2_023_000G1_scaffold_88_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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9013..9702
DNA (690bp) protein (230aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=3 Tax=Roseburia RepID=D4KP94_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CBL08696.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_023_000G1_scaffold_88_10
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10166..10408
DNA (243bp) protein (81aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7G8E4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA56456.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_023_000G1_scaffold_88_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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10423..11076
DNA (654bp) protein (218aa)
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.12 5.4.99.-)
RNA pseudouridine synthase {ECO:0000313|EMBL:EEV01892.1}; EC=5.4.99.- {ECO:0000313|EMBL:EEV01892.1};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Ribosomal large subunit pseudouridine synthase D n=3 Tax=Roseburia RepID=D4KP96_9FIRM
L2_023_000G1_scaffold_88_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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11119..12558
DNA (1440bp) protein (480aa)
prolyl-tRNA synthetase, family I (EC:6.1.1.15)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01571}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01571, ECO:0000313|EMBL:CBL08699.1};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01571}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Proline--tRNA ligase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KP97_9FIRM
L2_023_000G1_scaffold_88_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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12775..16086
DNA (3312bp) protein (1104aa)
Diguanylate cyclase (GGDEF) domain n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KP98_9FIRM
Diguanylate cyclase (GGDEF) domain {ECO:0000313|EMBL:CBL08700.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
diguanylate cyclase (GGDEF) domain
L2_023_000G1_scaffold_88_14
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16083..17423
DNA (1341bp) protein (447aa)
uncharacterized domain HDIG (EC:2.7.7.72 3.1.4.- 3.1.3.-)
Uncharacterized domain HDIG n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BT73_9FIRM
Uncharacterized domain HDIG {ECO:0000313|EMBL:CDA56452.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_023_000G1_scaffold_88_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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17416..18468
DNA (1053bp) protein (351aa)
Spore coat protein, CotS family n=2 Tax=Roseburia RepID=D4KPA0_9FIRM
spore coat protein, CotS family
Spore coat protein, CotS family {ECO:0000313|EMBL:CBL08702.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_023_000G1_scaffold_88_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18535..19959
DNA (1425bp) protein (475aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G8F1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV01898.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L2_023_000G1_scaffold_88_17
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20065..21801
DNA (1737bp) protein (579aa)
alpha-phosphoglucomutase (EC:5.4.2.8 5.4.2.2)
Alpha-phosphoglucomutase n=3 Tax=Roseburia RepID=D4L2V7_9FIRM
Alpha-phosphoglucomutase {ECO:0000313|EMBL:CDA56449.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_023_000G1_scaffold_88_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21821..22027
DNA (207bp) protein (69aa)
Uncharacterized protein n=2 Tax=Roseburia intestinalis RepID=C7G8F3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV01900.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L2_023_000G1_scaffold_88_19
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22029..22304
DNA (276bp) protein (92aa)
Bacterial nucleoid DNA-binding protein n=4 Tax=Roseburia RepID=D4KPA3_9FIRM
Bacterial nucleoid DNA-binding protein
Bacterial nucleoid DNA-binding protein {ECO:0000313|EMBL:CDA56448.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_023_000G1_scaffold_88_20
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22370..22612
DNA (243bp) protein (81aa)
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) n=4 Tax=Roseburia RepID=D4KPA4_9FIRM
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) {ECO:0000313|EMBL:CDA56447.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_023_000G1_scaffold_88_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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22685..22975
DNA (291bp) protein (97aa)
Sporulation protein YabP n=4 Tax=Roseburia RepID=D4KPA5_9FIRM
sporulation protein YabP
Sporulation protein YabP {ECO:0000313|EMBL:CBL13951.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_023_000G1_scaffold_88_22
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22972..23427
DNA (456bp) protein (152aa)
Spore cortex protein YabQ (Spore_YabQ) n=3 Tax=Roseburia RepID=D4KPA6_9FIRM
Spore cortex protein YabQ (Spore_YabQ).
Spore cortex protein YabQ (Spore_YabQ) {ECO:0000313|EMBL:CDA56445.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_023_000G1_scaffold_88_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23490..23792
DNA (303bp) protein (101aa)
Septum formation initiator n=4 Tax=Roseburia RepID=D4KPA7_9FIRM
Septum formation initiator.
Septum formation initiator {ECO:0000313|EMBL:CBL08709.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_023_000G1_scaffold_88_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23865..24854)
DNA (990bp) protein (330aa)
Predicted oxidoreductases (Related to aryl-alcohol dehydrogenases) n=2 Tax=Roseburia RepID=D4KPA8_9FIRM
Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)
Predicted oxidoreductases (Related to aryl-alcohol dehydrogenases) {ECO:0000313|EMBL:CBL08710.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_023_000G1_scaffold_88_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24970..25164
DNA (195bp) protein (65aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L2W5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL13955.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_023_000G1_scaffold_88_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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25176..27017
DNA (1842bp) protein (614aa)
Stage II sporulation protein E (SpoIIE). (EC:3.1.3.16)
Stage II sporulation protein E (SpoIIE) {ECO:0000313|EMBL:CBL08711.1}; EC=3.1.3.16 {ECO:0000313|EMBL:CBL08711.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Stage II sporulation protein E (SpoIIE) n=4 Tax=Roseburia RepID=D4KPA9_9FIRM
L2_023_000G1_scaffold_88_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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27018..28523
DNA (1506bp) protein (502aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain (EC:6.3.4.-)
tRNA(Ile)-lysidine synthase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G8G2_9FIRM
L2_023_000G1_scaffold_88_28
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28513..29043
DNA (531bp) protein (177aa)
Hypoxanthine phosphoribosyltransferase n=2 Tax=Roseburia RepID=C7G8G3_9FIRM
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:CDA56438.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypoxanthine phosphoribosyltransferase
L2_023_000G1_scaffold_88_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29057..30883
DNA (1827bp) protein (609aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
ATP-dependent zinc metalloprotease FtsH n=2 Tax=Roseburia RepID=C7G8G4_9FIRM
ATP-dependent metalloprotease FtsH
L2_023_000G1_scaffold_88_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31356..32417
DNA (1062bp) protein (354aa)
Sulfate/thiosulfate-binding protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KPB1_9FIRM
sulfate/thiosulfate-binding protein
Sulfate/thiosulfate-binding protein {ECO:0000313|EMBL:CBL08713.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Displaying items 1-30 of 118 in total

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