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L2_023_000G1_scaffold_133

Search features with annotation key words

Displaying items 1-30 of 113 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_023_000G1_scaffold_133_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..1062)
DNA (1062bp) protein (354aa)
putative pyridoxal phosphate-dependenttransferase (PLP-dependent transferase) (EC:2.6.1.-)
Putative pyridoxal phosphate-dependent transferase (PLP-dependent transferase) {ECO:0000313|EMBL:CAJ70344.1}; EC=2.6.1.- {ECO:0000313|EMBL:CAJ70344.1};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
C-S lyase family protein n=162 Tax=Clostridium difficile RepID=T3G498_CLODC
L2_023_000G1_scaffold_133_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1067..2137)
DNA (1071bp) protein (357aa)
Creatinase {ECO:0000313|EMBL:CDS89943.1}; Putative peptidase, M24 family {ECO:0000313|EMBL:CDT39348.1}; EC=3.4.-.- {ECO:0000313|EMBL:CDT39348.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Metallopeptidase M24 family protein n=6 Tax=Clostridium difficile RepID=T2VHA6_CLODI
peptidase
L2_023_000G1_scaffold_133_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2147..3469)
DNA (1323bp) protein (441aa)
PTS system, IIc component n=158 Tax=Clostridium difficile RepID=C9XS32_CLODC
PTS system transporter subunit IIC
Permease IIC component {ECO:0000256|PIRNR:PIRNR006351}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_023_000G1_scaffold_133_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3501..3836)
DNA (336bp) protein (112aa)
PTS system, IIb component n=219 Tax=Clostridium difficile RepID=C9XS33_CLODC
PTS system transporter subunit IIB
PTS system, Lactose/Cellobiose specific IIB subunit {ECO:0000313|EMBL:EFH08893.1}; TaxID=525259 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP08.;"
L2_023_000G1_scaffold_133_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3933..4238)
DNA (306bp) protein (102aa)
N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIA component n=191 Tax=Clostridium difficile RepID=T3G0A6_CLODC
PTS system lactose/cellobiose-family transporter subunit IIA
PTS system, lactose/cellobiose-family IIA component {ECO:0000313|EMBL:CCK92242.1}; TaxID=1215060 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T20.;"
L2_023_000G1_scaffold_133_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4253..5296)
DNA (1044bp) protein (348aa)
Aminopeptidase, M42 family {ECO:0000313|EMBL:CCL23897.1}; EC=3.-.-.- {ECO:0000313|EMBL:CCL23897.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Aminopeptidase ypdE n=159 Tax=Clostridium difficile RepID=C9XS35_CLODC
celM; exoaminopeptidase
L2_023_000G1_scaffold_133_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5299..7200)
DNA (1902bp) protein (634aa)
Transcription antiterminator, PTS operon regulator n=88 Tax=Clostridium difficile RepID=Q180U6_CLOD6
PRD domain protein {ECO:0000313|EMBL:EQE58861.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Transcription antiterminator, PTS operonregulator
L2_023_000G1_scaffold_133_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7526..8377)
DNA (852bp) protein (284aa)
putative ketose-bisphophate aldolase class II;putative tagatose-bisphosphate aldolase GatY (EC:4.1.2.-)
Putative ketose-bisphophate aldolase class II putative tagatose-bisphosphate aldolase GatY {ECO:0000313|EMBL:CDS89758.1}; EC=4.1.2.- {ECO:0000313|EMBL:CDS89758.1};; Putative ketose-bisphophate aldolase class IIputative tagatose-bisphosphate aldolase GatY {ECO:0000313|EMBL:CEK00159.1}; EC=4.1.2.- {ECO:0000313|EMBL:CEK00159.1};; Tagatose 6-phosphate aldolase 1, kbaY subunit {ECO:0000313|EMBL:CDS89949.1}; EC=4.1.2.40 {ECO:0000313|EMBL:CDS89949.1};; Tagatose-bisphosphate aldolase {ECO:0000313|EMBL:CKG73283.1}; EC=4.1.2.2 {ECO:0000313|EMBL:CKG73283.1};; EC=4.1.2.40 {ECO:0000313|EMBL:CKG73283.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Ketose-bisphosphate aldolase family protein n=129 Tax=Clostridium difficile RepID=T3G481_CLODC
L2_023_000G1_scaffold_133_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8426..9589)
DNA (1164bp) protein (388aa)
Putative phosphosugar isomerase putative tagatose-6-phosphate ketose/aldose isomerase AgaS {ECO:0000313|EMBL:CDT39245.1}; EC=5.-.-.- {ECO:0000313|EMBL:CDT39245.1};; Tagatose-6-phosphate ketose/aldose isomerase {ECO:0000313|EMBL:CDS89950.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
putative phosphosugar isomerase; putativetagatose-6-phosphate ketose/aldose isomerase AgaS (EC:5.-.-.-)
SIS domain protein n=7 Tax=Clostridium difficile RepID=T2VHF4_CLODI
L2_023_000G1_scaffold_133_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10066..10983
DNA (918bp) protein (306aa)
Oxidoreductase , NAD-binding Rossmann fold family protein n=7 Tax=Clostridium difficile RepID=T2VGK3_CLODI
Putative oxidoreductase with NAD(P)-binding Rossmann-fold domain {ECO:0000313|EMBL:CDS89760.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
putative oxidoreductase with NAD(P)-bindingRossmann-fold domain
L2_023_000G1_scaffold_133_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11106..12035)
DNA (930bp) protein (310aa)
Tagatose-6-phosphate kinase {ECO:0000256|PIRNR:PIRNR000535}; EC=2.7.1.144 {ECO:0000256|PIRNR:PIRNR000535};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
putative carbohydrate/purine kinase; putativetagatose-6-phosphate kinase LacC (EC:2.7.1.-)
Tagatose-6-phosphate kinase n=7 Tax=Clostridium difficile RepID=T2VH66_CLODI
L2_023_000G1_scaffold_133_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12304..13029
DNA (726bp) protein (242aa)
Bacterial regulatory s, gntR family protein n=22 Tax=Clostridium difficile RepID=T3G089_CLODC
Transcriptional regulator, GntR family
Transcriptional regulator, GntR family {ECO:0000313|EMBL:CAJ70355.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_023_000G1_scaffold_133_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13112..14266
DNA (1155bp) protein (385aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
N-acetylglucosamine-6-phosphate deacetylase (EC:3.5.1.25)
N-acetylglucosamine-6-phosphate deacetylase n=7 Tax=Clostridium difficile RepID=T3HCZ9_CLODI
L2_023_000G1_scaffold_133_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14679..14822)
DNA (144bp) protein (48aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=F3Y606_CLOD6
Uncharacterized protein {ECO:0000313|EMBL:CDS89958.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
conserved hypothetical protein
L2_023_000G1_scaffold_133_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14822..15292)
DNA (471bp) protein (157aa)
YbaK/proline--tRNA ligase associated domain protein n=145 Tax=Clostridium difficile RepID=G6B3G2_CLODI
YbaK/proline--tRNA ligase associated domain protein {ECO:0000313|EMBL:EHJ27101.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
putative nucleotide-binding protein
L2_023_000G1_scaffold_133_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15896..17044)
DNA (1149bp) protein (383aa)
Putative carboxy-terminal protease {ECO:0000313|EMBL:CDS89765.1}; EC=3.4.21.102 {ECO:0000313|EMBL:CDS89765.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
C-terminal processing peptidase family protein n=6 Tax=Clostridium difficile RepID=T3HD32_CLODI
exported carboxy-terminal processing protease
L2_023_000G1_scaffold_133_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17207..17776
DNA (570bp) protein (190aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
5-formyltetrahydrofolate cyclo-ligase (EC:6.3.3.2)
5-formyltetrahydrofolate cyclo-ligase n=7 Tax=Clostridium difficile RepID=T2VK21_CLODI
L2_023_000G1_scaffold_133_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17958..18392)
DNA (435bp) protein (145aa)
Uncharacterized protein n=5 Tax=Clostridium difficile RepID=G6B3G5_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ34048.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_023_000G1_scaffold_133_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18600..19694)
DNA (1095bp) protein (365aa)
Uncharacterized protein n=190 Tax=Clostridium difficile RepID=G6BVF8_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CCL23926.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L2_023_000G1_scaffold_133_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20117..21058)
DNA (942bp) protein (314aa)
Putative transketolase C-terminal section {ECO:0000313|EMBL:CDS89969.1}; EC=2.2.1.1 {ECO:0000313|EMBL:CDS89969.1};; Transketolase, pyridine binding subunit {ECO:0000313|EMBL:CDS89769.1}; EC=2.2.1.1 {ECO:0000313|EMBL:CDS89769.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
tkt2; Transketolase, pyridine binding subunit (EC:2.2.1.1)
Transketolase, pyrimidine binding domain protein n=7 Tax=Clostridium difficile RepID=T2VI60_CLODI
L2_023_000G1_scaffold_133_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21051..21878)
DNA (828bp) protein (276aa)
Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein n=204 Tax=Clostridium difficile RepID=C9XS63_CLODC
tkt; transketolase, thiamine disphosphate-binding subunit
Transketolase, thiamine diphosphate binding domain protein {ECO:0000313|EMBL:EFH08908.1}; TaxID=525259 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP08.;"
L2_023_000G1_scaffold_133_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22049..22441)
DNA (393bp) protein (131aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=525258 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP07.;"
mRNA interferase n=2 Tax=Clostridium difficile RepID=T2T8L9_CLODI
regulator of cell growth
L2_023_000G1_scaffold_133_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22401..22688)
DNA (288bp) protein (96aa)
CopG-family transcriptional regulator n=219 Tax=Clostridium difficile RepID=C9XS65_CLODC
CopG family transcriptional regulator
Putative antitoxin EndoAI {ECO:0000313|EMBL:CCK88810.1}; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
L2_023_000G1_scaffold_133_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22721..23878)
DNA (1158bp) protein (386aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Alanine racemase n=155 Tax=Clostridium difficile RepID=C9XS66_CLODC
alanine racemase
L2_023_000G1_scaffold_133_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23893..24483)
DNA (591bp) protein (197aa)
Uncharacterized protein n=190 Tax=Clostridium difficile RepID=Q180W3_CLOD6
lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:EQG73564.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_023_000G1_scaffold_133_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24504..24965)
DNA (462bp) protein (154aa)
CBS domain protein n=218 Tax=Clostridium difficile RepID=C9XS68_CLODC
hypothetical protein
CBS domain protein {ECO:0000313|EMBL:EQG73602.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_023_000G1_scaffold_133_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24980..25360)
DNA (381bp) protein (127aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237208}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Holo-[acyl-carrier-protein] synthase n=61 Tax=Clostridium difficile RepID=T2VH71_CLODI
acpS; 4'-phosphopantetheinyl transferase
L2_023_000G1_scaffold_133_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25822..26082)
DNA (261bp) protein (87aa)
ATP synthase F1, epsilon subunit {ECO:0000313|EMBL:EQE58901.1}; EC=3.6.3.14 {ECO:0000313|EMBL:EQE58901.1};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
ATP synthase F1, epsilon subunit n=198 Tax=Clostridium difficile RepID=C9XS70_CLODC
atpC; ATP synthase subunit epsilon
L2_023_000G1_scaffold_133_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26085..27479)
DNA (1395bp) protein (465aa)
atpD1; ATP synthase subunit beta (ATPase subunit beta)(ATP synthase F1 sector subunit beta) (EC:3.6.3.14)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
ATP synthase subunit beta n=202 Tax=Clostridium difficile RepID=ATPB_CLOD6
L2_023_000G1_scaffold_133_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27492..28370)
DNA (879bp) protein (293aa)
ATP synthase gamma chain n=178 Tax=Clostridium difficile RepID=T3G509_CLODC
F0F1 ATP synthase subunit gamma
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Displaying items 1-30 of 113 in total

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