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L2_023_000G1_scaffold_334

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_023_000G1_scaffold_334_1
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(3..965)
DNA (963bp) protein (321aa)
Conserved hypothetical secreted protein with G5 domain n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZT0_BIFBP
hypothetical protein
Conserved hypothetical secreted protein with G5 domain {ECO:0000313|EMBL:CDB22127.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_023_000G1_scaffold_334_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1198..1560)
DNA (363bp) protein (121aa)
thioredoxin (EC:1.8.1.8)
Thioredoxin n=4 Tax=Bifidobacterium bifidum RepID=E4NZT1_BIFBP
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_023_000G1_scaffold_334_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1758..2384
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V810_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR49752.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
L2_023_000G1_scaffold_334_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2530..3384
DNA (855bp) protein (285aa)
Hydrolase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2IM89_BIFBI
Hydrolase {ECO:0000313|EMBL:EKE49875.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hydrolase
L2_023_000G1_scaffold_334_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3498..4589
DNA (1092bp) protein (364aa)
phosphohydrolase (EC:3.6.1.22)
Hydrolase, NUDIX family n=2 Tax=Bifidobacterium bifidum RepID=E4V812_BIFBI
Hydrolase, NUDIX family {ECO:0000313|EMBL:EFR49754.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L2_023_000G1_scaffold_334_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4667..6517
DNA (1851bp) protein (617aa)
ErfK/YbiS/YcfS/YnhG n=2 Tax=Bifidobacterium bifidum RepID=E4V813_BIFBI
ErfK/YbiS/YcfS/YnhG {ECO:0000313|EMBL:EFR49755.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
L2_023_000G1_scaffold_334_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6664..7071
DNA (408bp) protein (136aa)
Glycine cleavage system H protein n=6 Tax=Bifidobacterium bifidum RepID=E3EPT8_BIFBS
gcvH; glycine cleavage system H protein GcvH
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_023_000G1_scaffold_334_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7199..8548
DNA (1350bp) protein (450aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HWF3_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE50772.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
L2_023_000G1_scaffold_334_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8604..11066
DNA (2463bp) protein (821aa)
ptrB; protease II PtrB (EC:3.4.21.83)
Peptidase, S9A/B/C family, catalytic domain protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CDW9_BIFBI
Peptidase, S9A/B/C family, catalytic domain protein {ECO:0000313|EMBL:ERI82193.1}; Protease {ECO:0000313|EMBL:BAQ97596.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_023_000G1_scaffold_334_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11550..12581
DNA (1032bp) protein (344aa)
leuB; 3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase {ECO:0000313|EMBL:AFL03971.1}; EC=1.1.1.85 {ECO:0000313|EMBL:AFL03971.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
3-isopropylmalate dehydrogenase n=2 Tax=Bifidobacterium bifidum RepID=I3WGF8_BIFBI
L2_023_000G1_scaffold_334_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13340..13978
DNA (639bp) protein (213aa)
LplA Lipoate-protein ligase A {ECO:0000313|EMBL:KFI42480.1}; EC=2.7.7.63 {ECO:0000313|EMBL:KFI42480.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Biotin/lipoate A/B protein ligase family protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DR70_BIFBI
lplA; Lipoate-protein ligase A
L2_023_000G1_scaffold_334_12
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14142..14861
DNA (720bp) protein (240aa)
transcription regulator, crp family (EC:3.1.1.5)
Transcription regulator, crp family n=6 Tax=Bifidobacterium RepID=E4NZU1_BIFBP
Transcription regulator crp family {ECO:0000313|EMBL:CDB22396.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_023_000G1_scaffold_334_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15036..17345
DNA (2310bp) protein (770aa)
Glycosyl transferase, family 51 n=2 Tax=Bifidobacterium bifidum RepID=E3EPU5_BIFBS
glycosyl transferase family protein
Glycosyl transferase, family 51 {ECO:0000313|EMBL:ADO52632.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_023_000G1_scaffold_334_14
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17633..18766
DNA (1134bp) protein (378aa)
NADH-dependent flavin oxidoreductase YqjM n=3 Tax=Bifidobacterium RepID=E3ELT7_BIFBS
baiC; NADH-dependent flavin oxidoreductase YqjM
NADH-dependent flavin oxidoreductase YqjM {ECO:0000313|EMBL:CDB22394.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_023_000G1_scaffold_334_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18836..19993)
DNA (1158bp) protein (386aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|SAAS:SAAS00084821}; EC=1.3.5.2 {ECO:0000256|SAAS:SAAS00084821};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Dihydroorotate dehydrogenase n=8 Tax=Bifidobacterium RepID=E3ELT8_BIFBS
pyrD2; dihydroorotate dehydrogenase
L2_023_000G1_scaffold_334_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20187..20990
DNA (804bp) protein (268aa)
Transcriptional regulator, DeoR family n=7 Tax=Bifidobacterium RepID=E3ELT9_BIFBS
DeoR family transcriptional regulator
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:EFR49766.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L2_023_000G1_scaffold_334_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20995..22245
DNA (1251bp) protein (417aa)
UTP--hexose-1-phosphate uridylyltransferase {ECO:0000313|EMBL:EFR49767.1}; EC=2.7.7.10 {ECO:0000313|EMBL:EFR49767.1};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Galactose-1-phosphate uridylyltransferase n=2 Tax=Bifidobacterium bifidum RepID=E4V825_BIFBI
galT1; galactose-1-phosphate uridylyltransferase
L2_023_000G1_scaffold_334_18
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22335..23585
DNA (1251bp) protein (417aa)
galK; galactokinase GalK (EC:2.7.1.6)
Galactokinase n=8 Tax=Bifidobacterium RepID=E3ELU1_BIFBS
Galactokinase {ECO:0000256|SAAS:SAAS00025843}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_023_000G1_scaffold_334_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23803..25128)
DNA (1326bp) protein (442aa)
Transporter, major facilitator superfamily MFS1, alpha-ketoglutarate permease n=5 Tax=Bifidobacterium RepID=E3ELU2_BIFBS
kgtP; transporter major facilitator superfamily MFS1, alpha-ketoglutarate permease
Transporter, major facilitator family protein {ECO:0000313|EMBL:ERI82055.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_023_000G1_scaffold_334_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25505..25777
DNA (273bp) protein (91aa)
UPF0237 protein BBIF_0434 n=8 Tax=Bifidobacterium RepID=E3ELU3_BIFBS
hypothetical protein
UPF0237 protein BBIF_0434 {ECO:0000256|HAMAP-Rule:MF_01054}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_023_000G1_scaffold_334_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25797..27161
DNA (1365bp) protein (455aa)
UPF0210 protein BBIF_0435 n=5 Tax=Bifidobacterium bifidum RepID=E3ELU4_BIFBS
hypothetical protein
UPF0210 protein BBB_0387 {ECO:0000256|HAMAP-Rule:MF_01221}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_023_000G1_scaffold_334_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28154..28306
DNA (153bp) protein (51aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ELU5_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52641.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_023_000G1_scaffold_334_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28348..29070)
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GDE3_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:KFI42492.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_023_000G1_scaffold_334_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29496..30143)
DNA (648bp) protein (216aa)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=7 Tax=Bifidobacterium RepID=E4NZV3_BIFBP
RNA methyltransferase
L2_023_000G1_scaffold_334_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30228..31058
DNA (831bp) protein (277aa)
Coagulation factor 5/8 type domain containing protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2I9F8_BIFBI
Coagulation factor 5/8 type domain containing protein {ECO:0000313|EMBL:EKE51554.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
coagulation factor 5/8 type domain
L2_023_000G1_scaffold_334_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31103..31558
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HVM2_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE51553.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
L2_023_000G1_scaffold_334_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31681..32646
DNA (966bp) protein (322aa)
mutY; MutY A/G-specific adenine DNA glycosylase (EC:4.2.99.18)
A/G-specific adenine glycosylase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HYL1_BIFBI
A/G-specific adenine glycosylase {ECO:0000313|EMBL:EKE51552.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L2_023_000G1_scaffold_334_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32825..33397
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HBW4_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE51551.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
L2_023_000G1_scaffold_334_29
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33546..37229
DNA (3684bp) protein (1228aa)
rpoB; DNA-directed RNA polymerase subunit beta RpoB (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZV6_BIFBP
L2_023_000G1_scaffold_334_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

37342..41373
DNA (4032bp) protein (1344aa)
rpoC; DNA-directed RNA polymerase beta' chain RpoC (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
DNA-directed RNA polymerase subunit beta' n=5 Tax=Bifidobacterium bifidum RepID=E3ELV2_BIFBS
Displaying items 1-30 of 48 in total

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