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L2_023_000G1_scaffold_345

Search features with annotation key words

Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_023_000G1_scaffold_345_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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394..675
DNA (282bp) protein (94aa)
Penicillinase repressor family protein n=8 Tax=Clostridium difficile RepID=T2W0Q1_CLODI
Transcriptional regulator, beta-lactamsrepressor Phage-type
Regulatory protein {ECO:0000313|EMBL:CKG90148.1}; Transcriptional regulator, beta-lactams repressor Phage-type {ECO:0000313|EMBL:CDS84925.1}; Transcriptional regulator, beta-lactamsrepressor Phage-type {ECO:0000313|EMBL:CEJ97537.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS85354.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_023_000G1_scaffold_345_2
Clostridium phage CDMH1, Caudovirales, Viruses

Not on your lists

715..1101
DNA (387bp) protein (129aa)
Penicillinase repressor family protein n=35 Tax=Clostridium difficile RepID=T2W1Z4_CLODI
Putative regulatory protein {ECO:0000313|EMBL:CDI66660.1}; TaxID=1411095 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Myoviridae.;" source="Clostridium phage CDMH1.;"
Transcriptional regulator, beta-lactamsrepressor Phage-type
L2_023_000G1_scaffold_345_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1260..1811
DNA (552bp) protein (184aa)
4Fe-4S dicluster domain protein n=8 Tax=Clostridium difficile RepID=T2W0T3_CLODI
Aldo/keto reductase {ECO:0000313|EMBL:CKG90206.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
aldo/keto reductase
L2_023_000G1_scaffold_345_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2195..3433
DNA (1239bp) protein (413aa)
Uncharacterized protein n=135 Tax=Clostridium difficile RepID=G6BUM3_CLODI
Putative membrane protein {ECO:0000313|EMBL:EQG78207.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
putative membrane protein
L2_023_000G1_scaffold_345_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3462..4349
DNA (888bp) protein (296aa)
Prenyltransferase, UbiA family n=161 Tax=Clostridium difficile RepID=G6BUM2_CLODI
UbiA prenyltransferase family protein {ECO:0000313|EMBL:EQE68349.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase
L2_023_000G1_scaffold_345_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4383..5012
DNA (630bp) protein (210aa)
HAD phosphoserine phosphatase-like hydrolase, IB family protein n=68 Tax=Clostridium difficile RepID=T2VYM7_CLODI
HAD phosphoserine phosphatase-like hydrolase, IB family protein {ECO:0000313|EMBL:EQE68348.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
hydrolase
L2_023_000G1_scaffold_345_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5017..5481
DNA (465bp) protein (155aa)
Small multi-drug export family protein n=36 Tax=Clostridium difficile RepID=T2W023_CLODI
hypothetical protein
Putative small multi-drug export protein {ECO:0000313|EMBL:EHJ31336.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L2_023_000G1_scaffold_345_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5731..7098
DNA (1368bp) protein (456aa)
MATE efflux family protein n=194 Tax=Clostridium difficile RepID=T3I2G8_CLODC
putative drug/sodium antiporter, MATE family
MATE efflux family protein {ECO:0000313|EMBL:EQE68363.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_023_000G1_scaffold_345_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


7307..8572
DNA (1266bp) protein (422aa)
30S ribosomal protein S1 n=157 Tax=Clostridium difficile RepID=Q18AI4_CLOD6
30S ribosomal protein S1
30S ribosomal protein S1 {ECO:0000313|EMBL:CDS84437.1}; Putative 30S ribosomal protein S1 {ECO:0000313|EMBL:CKG90372.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_023_000G1_scaffold_345_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8690..9409
DNA (720bp) protein (240aa)
Putative hydrolase {ECO:0000313|EMBL:CKG90396.1}; EC=3.1.3.- {ECO:0000313|EMBL:CKG90396.1};; Putative phosphatase NT01CX_1282 {ECO:0000313|EMBL:CDS84883.1}; EC=3.1.3.- {ECO:0000313|EMBL:CDS84883.1};; Putative phosphatase/hydrolase {ECO:0000313|EMBL:CDS84439.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
PHP domain protein n=137 Tax=Clostridium difficile RepID=T3I486_CLODC
putative phosphatase/hydrolase
L2_023_000G1_scaffold_345_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9454..9876
DNA (423bp) protein (141aa)
Uncharacterized protein n=7 Tax=Clostridium difficile RepID=T2VZ46_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CDS84885.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
hypothetical protein
L2_023_000G1_scaffold_345_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10394..12136
DNA (1743bp) protein (581aa)
leuA; 2-isopropylmalate synthase (EC:2.3.3.13)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
2-isopropylmalate synthase n=121 Tax=Clostridium difficile RepID=T3I2A1_CLODC
L2_023_000G1_scaffold_345_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12093..13370
DNA (1278bp) protein (426aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01027}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01027};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
3-isopropylmalate dehydratase large subunit n=111 Tax=Clostridium difficile RepID=T2TPT6_CLODI
3-isopropylmalate dehydratase large subunit
L2_023_000G1_scaffold_345_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13385..13876
DNA (492bp) protein (164aa)
leuD; 3-isopropylmalate dehydratase small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01032}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01032};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
3-isopropylmalate dehydratase small subunit n=198 Tax=Clostridium difficile RepID=LEUD_CLOD6
L2_023_000G1_scaffold_345_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13883..14953
DNA (1071bp) protein (357aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
3-isopropylmalate dehydrogenase n=33 Tax=Clostridium difficile RepID=T2V278_CLODI
3-isopropylmalate dehydrogenase
L2_023_000G1_scaffold_345_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15316..15831
DNA (516bp) protein (172aa)
Thioesterase family protein n=47 Tax=Clostridium difficile RepID=G6B6R8_CLODI
thioesterase
Thioesterase family protein {ECO:0000313|EMBL:EHJ31327.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L2_023_000G1_scaffold_345_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16204..17280
DNA (1077bp) protein (359aa)
Putative serine-pyruvate aminotransferase {ECO:0000313|EMBL:CCL21086.1}; EC=2.6.1.- {ECO:0000313|EMBL:CCL21086.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Aminotransferase class-V family protein n=192 Tax=Clostridium difficile RepID=T2TQ39_CLODI
aminotransferase
L2_023_000G1_scaffold_345_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17520..18461
DNA (942bp) protein (314aa)
D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain protein n=209 Tax=Clostridium difficile RepID=C9XME8_CLODC
D-3-phosphoglycerate dehydrogenase
4-phosphoerythronate dehydrogenase {ECO:0000313|EMBL:EHJ31325.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L2_023_000G1_scaffold_345_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18493..19743
DNA (1251bp) protein (417aa)
Uncharacterized protein n=181 Tax=Clostridium difficile RepID=T3I564_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ31054.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_023_000G1_scaffold_345_20
unknown

Not on your lists

19960..20055
DNA (96bp) protein (32aa)

This feature has no annotations

L2_023_000G1_scaffold_345_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20564..24109
DNA (3546bp) protein (1182aa)
Diguanylate cyclase domain protein n=7 Tax=Clostridium difficile RepID=T2W1V9_CLODI
Two-component sensor histidine kinase {ECO:0000313|EMBL:CDS84898.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Two-component sensor histidine kinase
L2_023_000G1_scaffold_345_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24294..26228
DNA (1935bp) protein (645aa)
UPF0313 protein QC5_0968 n=18 Tax=Clostridium difficile RepID=T2W1W8_CLODI
UPF0313 protein QQG_1150 {ECO:0000256|HAMAP-Rule:MF_01251}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
putative iron-sulfur protein
L2_023_000G1_scaffold_345_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26334..27329
DNA (996bp) protein (332aa)
Menaquinone biosynthesis family protein n=3 Tax=Clostridium difficile RepID=T3PAF8_CLODI
Menaquinone biosynthesis family protein {ECO:0000313|EMBL:EQG78191.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
ABC-type transportsystem,nitrate/sulfonate/taurine extracellularsolute-binding protein
L2_023_000G1_scaffold_345_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27301..28086
DNA (786bp) protein (262aa)
ABC transporter, permease protein n=164 Tax=Clostridium difficile RepID=C9XMF3_CLODC
ABC transporter permease
Binding--dependent transport system inner membrane component family protein {ECO:0000313|EMBL:EQE67919.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_023_000G1_scaffold_345_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28074..28772
DNA (699bp) protein (233aa)
ABC transporter family protein n=165 Tax=Clostridium difficile RepID=C9XMF4_CLODC
ABC transporter ATP-binding protein
ABC transporter family protein {ECO:0000313|EMBL:EQG78193.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_023_000G1_scaffold_345_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28895..29368
DNA (474bp) protein (158aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=185 Tax=Clostridium difficile RepID=C9XMF5_CLODC
regulatory protein
L2_023_000G1_scaffold_345_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29565..30404
DNA (840bp) protein (280aa)
Fumarate hydratase, subunit A n=167 Tax=Clostridium difficile RepID=C9XMF6_CLODC
fumA; fumarate hydratase
Fumarate hydratase, subunit A {ECO:0000313|EMBL:CBE02957.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L2_023_000G1_scaffold_345_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30417..30965
DNA (549bp) protein (183aa)
Hydrolyase, tartrate beta subunit/fumarate, Fe-S type domain protein n=211 Tax=Clostridium difficile RepID=C9XMF7_CLODC
fumarate hydratase subunit B
Hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type {ECO:0000313|EMBL:EHJ31046.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_023_000G1_scaffold_345_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31031..32212
DNA (1182bp) protein (394aa)
NADP-dependent malic enzyme (Conversion of malate into pyruvate) {ECO:0000313|EMBL:CDS84912.1}; EC=1.1.1.40 {ECO:0000313|EMBL:CDS84912.1};; Putative NAD-dependent malic enzyme {ECO:0000313|EMBL:CDS84478.1}; EC=1.1.1.38 {ECO:0000313|EMBL:CDS84478.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
putative NAD-dependent malic enzyme (EC:1.1.1.38)
Malic enzyme, NAD binding domain protein n=7 Tax=Clostridium difficile RepID=T2VYJ0_CLODI
L2_023_000G1_scaffold_345_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32504..32893
DNA (390bp) protein (130aa)
Acetyltransferase, GNAT family n=7 Tax=Clostridium difficile RepID=D5Q1G0_CLODI
GNAT family acetyltransferase {ECO:0000313|EMBL:CDS84913.1}; Putative acyl-CoA N-acyltransferase {ECO:0000313|EMBL:CDT67202.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
putative acyl-CoA N-acyltransferase
Displaying items 1-30 of 59 in total

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