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L2_023_000G1_scaffold_395

Search features with annotation key words

Displaying items 1-30 of 66 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_023_000G1_scaffold_395_1
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..706
DNA (705bp) protein (235aa)
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TYN4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68464.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L2_023_000G1_scaffold_395_2
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(758..1252)
DNA (495bp) protein (165aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B8K7_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43416.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L2_023_000G1_scaffold_395_3
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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1521..3524
DNA (2004bp) protein (668aa)
Repeat protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G7T7_9FIRM
Repeat protein {ECO:0000313|EMBL:EDR45741.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
hypothetical protein
L2_023_000G1_scaffold_395_4
unknown

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3650..4147
DNA (498bp) protein (166aa)

This feature has no annotations

L2_023_000G1_scaffold_395_5
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4305..6557
DNA (2253bp) protein (751aa)
formate acetyltransferase 1 (EC:2.3.1.54)
Formate C-acetyltransferase n=3 Tax=Lachnospiraceae RepID=A7B374_RUMGN
Formate acetyltransferase {ECO:0000313|EMBL:ETD21076.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L2_023_000G1_scaffold_395_6
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6635..7363
DNA (729bp) protein (243aa)
Pyruvate formate-lyase-activating enzyme {ECO:0000256|RuleBase:RU362053}; EC=1.97.1.4 {ECO:0000256|RuleBase:RU362053};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Pyruvate formate-lyase 1-activating enzyme n=4 Tax=Clostridiales RepID=A7B375_RUMGN
pyruvate formate-lyase activating enzyme
L2_023_000G1_scaffold_395_7
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7416..7577)
DNA (162bp) protein (54aa)
Rubredoxin n=4 Tax=Clostridiales RepID=A7B376_RUMGN
Rubredoxin {ECO:0000256|PIRNR:PIRNR000071}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
rubredoxin
L2_023_000G1_scaffold_395_8
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7880..9034
DNA (1155bp) protein (385aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UIM5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68657.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L2_023_000G1_scaffold_395_9
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9242..9730
DNA (489bp) protein (163aa)
Transcriptional regulator, MarR family n=4 Tax=Clostridiales RepID=A7B379_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43797.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
MarR-like transcriptional regulator
L2_023_000G1_scaffold_395_10
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9749..11983
DNA (2235bp) protein (745aa)
ABC transporter, ATP-binding protein n=3 Tax=Lachnospiraceae RepID=A7B380_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD21071.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
ABC-type multidrug transport system, ATPase and permease components
L2_023_000G1_scaffold_395_11
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11976..13799
DNA (1824bp) protein (608aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TSE4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68660.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
ABC-type multidrug transport system, ATPase and permease components
L2_023_000G1_scaffold_395_12
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13750..13908
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B382_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN77408.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
L2_023_000G1_scaffold_395_13
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13899..14402
DNA (504bp) protein (168aa)
Cyclic pyranopterin monophosphate synthase accessory protein n=3 Tax=Lachnospiraceae RepID=A7B383_RUMGN
Cyclic pyranopterin monophosphate synthase accessory protein {ECO:0000256|HAMAP-Rule:MF_01224}; Molybdenum cofactor biosynthesis protein C {ECO:0000256|HAMAP-Rule:MF_01224}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
GTP cyclohydrolase subunit MoaC
L2_023_000G1_scaffold_395_14
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14399..14899
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UIM9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68662.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
molybdenum cofactor synthesis domain
L2_023_000G1_scaffold_395_15
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14872..15852
DNA (981bp) protein (327aa)
Cyclic pyranopterin monophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01225}; EC=4.1.99.18 {ECO:0000256|HAMAP-Rule:MF_01225};; Molybdenum cofactor biosynthesis protein A {ECO:0000256|HAMAP-Rule:MF_01225}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Cyclic pyranopterin monophosphate synthase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TSB9_9FIRM
GTP cyclohydrolase subunit MoaA
L2_023_000G1_scaffold_395_16
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15859..16302
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TZ80_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68664.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L2_023_000G1_scaffold_395_17
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16394..17350
DNA (957bp) protein (319aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
[LSU ribosomal protein L11P]-lysine N-methyltransferase (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TSE9_9FIRM
L2_023_000G1_scaffold_395_18
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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17367..18107
DNA (741bp) protein (247aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
RNA methyltransferase, RsmE family (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UBY4_9FIRM
L2_023_000G1_scaffold_395_19
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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18147..19304
DNA (1158bp) protein (386aa)
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes (EC:2.8.1.7)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UIN5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68667.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L2_023_000G1_scaffold_395_20
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19352..20533
DNA (1182bp) protein (394aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
tRNA sulfurtransferase ThiI n=3 Tax=Lachnospiraceae RepID=V8C1V1_RUMGN
thiazole biosynthesis/tRNA modification protein ThiI
L2_023_000G1_scaffold_395_21
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20586..20819)
DNA (234bp) protein (78aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B391_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43786.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
PTS HPr component phosphorylation site.
L2_023_000G1_scaffold_395_22
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20944..22236
DNA (1293bp) protein (431aa)
tRNA methylthiotransferase YqeV n=4 Tax=Clostridiales RepID=A7B392_RUMGN
MiaB-like tRNA modifying enzyme {ECO:0000313|EMBL:EGN43785.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
MiaB-like tRNA modifying enzyme
L2_023_000G1_scaffold_395_23
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22344..22607
DNA (264bp) protein (88aa)
UPF0297 protein RUMGNA_02021 n=4 Tax=Clostridiales RepID=A7B393_RUMGN
UPF0297 protein HMPREF1201_01065 {ECO:0000256|HAMAP-Rule:MF_01507}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hypothetical protein
L2_023_000G1_scaffold_395_24
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22614..23060
DNA (447bp) protein (149aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
YqgF family RNAse H domain-containing protein n=4 Tax=Clostridiales RepID=V8C0Z3_RUMGN
conserved hypothetical protein TIGR00250
L2_023_000G1_scaffold_395_25
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23086..23346
DNA (261bp) protein (87aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B395_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43782.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Protein of unknown function (DUF1292).
L2_023_000G1_scaffold_395_26
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23382..23864
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TZ89_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68674.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Fe2+/Zn2+ uptake regulation proteins
L2_023_000G1_scaffold_395_27
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23888..25552
DNA (1665bp) protein (555aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B397_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD21055.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
putative hydrolase of the metallo-beta-lactamase superfamily protein
L2_023_000G1_scaffold_395_28
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25556..26209
DNA (654bp) protein (218aa)
O-methyltransferase n=4 Tax=Clostridiales RepID=A7B398_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN43779.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Predicted O-methyltransferase
L2_023_000G1_scaffold_395_29
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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26211..27443
DNA (1233bp) protein (411aa)
Collagenase and related proteases (EC:3.4.-.-)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UIP3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68677.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L2_023_000G1_scaffold_395_30
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27417..28043)
DNA (627bp) protein (209aa)
RNA polymerase sigma factor n=4 Tax=Clostridiales RepID=A7B3A0_RUMGN
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
FliA/WhiG subfamily RNA polymerase sigma-28 subunit
Displaying items 1-30 of 66 in total

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