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L2_023_000G1_scaffold_458

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_023_000G1_scaffold_458_1
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

151..636
DNA (486bp) protein (162aa)
CysE Serine O-acetyltransferase n=8 Tax=Bifidobacterium RepID=E4NXZ2_BIFBP
cysE; serine O-acetyltransferase
CysE Serine O-acetyltransferase {ECO:0000313|EMBL:CDB22218.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_023_000G1_scaffold_458_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(806..2233)
DNA (1428bp) protein (476aa)
Amino acid transporter n=6 Tax=Bifidobacterium RepID=E3EP84_BIFBS
amino acid transporter
Amino acid transporter {ECO:0000313|EMBL:AFL04911.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_023_000G1_scaffold_458_3
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2468..3826
DNA (1359bp) protein (453aa)
alr; alanine racemase (EC:5.1.1.1)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Alanine racemase n=4 Tax=Bifidobacterium RepID=I3WJ47_BIFBI
L2_023_000G1_scaffold_458_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3941..5221
DNA (1281bp) protein (427aa)
Deoxyguanosinetriphosphate triphosphohydrolase (DGTPase) n=4 Tax=Bifidobacterium bifidum RepID=E3EP82_BIFBS
dgt; deoxyguanosinetriphosphate triphosphohydrolase
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000313|EMBL:EKF16248.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_023_000G1_scaffold_458_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5276..7366
DNA (2091bp) protein (697aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051044}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051045};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
DNA primase n=7 Tax=Bifidobacterium bifidum RepID=E3EP81_BIFBS
dnaG; DNA primase
L2_023_000G1_scaffold_458_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7700..8569)
DNA (870bp) protein (290aa)
Transcriptional regulator n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WJ44_BIFBI
rpiR; transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AFL04907.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_023_000G1_scaffold_458_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8701..9981)
DNA (1281bp) protein (427aa)
Putative transcriptional regulator n=2 Tax=Bifidobacterium bifidum RepID=I3WJ43_BIFBI
transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AFL04906.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_023_000G1_scaffold_458_8
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10322..10612
DNA (291bp) protein (97aa)
Uncharacterized protein n=6 Tax=Bifidobacterium RepID=E4V7G9_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB22211.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_023_000G1_scaffold_458_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10961..12925)
DNA (1965bp) protein (655aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|SAAS:SAAS00085897};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
dxs; 1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
Putative 1-deoxy-D-xylulose-5-phosphate synthase n=2 Tax=Bifidobacterium bifidum RepID=E4V7G8_BIFBI
L2_023_000G1_scaffold_458_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13181..14170
DNA (990bp) protein (330aa)
Alcohol dehydrogenase n=2 Tax=Bifidobacterium bifidum RepID=K2I988_BIFBI
Alcohol dehydrogenase {ECO:0000313|EMBL:EKE51494.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
adh2; alcohol dehydrogenase
L2_023_000G1_scaffold_458_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14214..14711
DNA (498bp) protein (166aa)
purE; phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit PurE (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
N5-carboxyaminoimidazole ribonucleotide mutase n=7 Tax=Bifidobacterium RepID=E3EP75_BIFBS
L2_023_000G1_scaffold_458_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14695..15864
DNA (1170bp) protein (390aa)
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; 5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
Phosphoribosylaminoimidazole carboxylase ATPase subunit n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2MDH9_BIFBI
purK; phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit
L2_023_000G1_scaffold_458_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16014..16409
DNA (396bp) protein (132aa)
Transcriptional regulator, Fur family n=2 Tax=Bifidobacterium bifidum RepID=E4VAY4_BIFBI
Transcriptional regulator, Fur family {ECO:0000313|EMBL:EFR50734.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
ferric uptake regulator, Fur family
L2_023_000G1_scaffold_458_14
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16567..16836)
DNA (270bp) protein (90aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=R6GCX3_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB22205.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
L2_023_000G1_scaffold_458_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16833..17633)
DNA (801bp) protein (267aa)
TIGR03943 family protein n=5 Tax=Bifidobacterium RepID=E4VAY2_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKF15407.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_023_000G1_scaffold_458_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17638..18759)
DNA (1122bp) protein (374aa)
Uncharacterized protein n=3 Tax=Bifidobacterium RepID=K2M071_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKF15406.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
hypothetical protein
L2_023_000G1_scaffold_458_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(18968..19138)
DNA (171bp) protein (57aa)
50S ribosomal protein L32 n=3 Tax=Bifidobacterium RepID=K2HYE9_BIFBI
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
rpmF; 50S ribosomal protein L32
L2_023_000G1_scaffold_458_18
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19138..19260)
DNA (123bp) protein (41aa)
50S ribosomal protein L36 n=8 Tax=Bifidobacterium RepID=E3EP68_BIFBS
50S ribosomal protein L36
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_023_000G1_scaffold_458_19
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(19435..19692)
DNA (258bp) protein (86aa)
50S ribosomal protein L31 type B n=4 Tax=Bifidobacterium RepID=I3WJ31_BIFBI
rpmE; 50S ribosomal protein L31
50S ribosomal protein L31 type B {ECO:0000256|HAMAP-Rule:MF_00502, ECO:0000256|SAAS:SAAS00004504}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_023_000G1_scaffold_458_20
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(19739..20044)
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=7 Tax=Bifidobacterium RepID=E4NXX3_BIFBP
rpsN; 30S ribosomal protein S14
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_023_000G1_scaffold_458_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(20121..20417)
DNA (297bp) protein (99aa)
50S ribosomal protein L28 n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WJ29_BIFBI
rpmB; 50S ribosomal protein L28
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_023_000G1_scaffold_458_22
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20467..21234
DNA (768bp) protein (256aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=K2M2T5_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:CDB22195.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
L2_023_000G1_scaffold_458_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21355..22260
DNA (906bp) protein (302aa)
ABC transporter, substrate-binding protein n=2 Tax=Bifidobacterium RepID=E4VAX4_BIFBI
ABC transporter, substrate-binding protein {ECO:0000313|EMBL:EFR50724.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
metal ABC transporter substrate-binding protein
L2_023_000G1_scaffold_458_24
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22933..25551)
DNA (2619bp) protein (873aa)
Lysyl-tRNA synthetase n=2 Tax=Bifidobacterium RepID=I3WJ26_BIFBI
Lysyl-tRNA synthetase {ECO:0000313|EMBL:CDB22192.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
lysyl-tRNA synthetase
L2_023_000G1_scaffold_458_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25548..26927)
DNA (1380bp) protein (460aa)
Putative esterase n=2 Tax=Bifidobacterium bifidum RepID=E3EN43_BIFBS
putative esterase
Putative esterase {ECO:0000313|EMBL:ADO53477.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_023_000G1_scaffold_458_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27324..29462
DNA (2139bp) protein (713aa)
Arylsulfatase n=3 Tax=Bifidobacterium bifidum RepID=U2DPN7_BIFBI
Phosphoglycerol transferase {ECO:0000313|EMBL:KFI43331.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
cgmA; putative cyclic beta-1,2-glucan modification protein
L2_023_000G1_scaffold_458_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29637..31004)
DNA (1368bp) protein (456aa)
purD; phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Phosphoribosylamine--glycine ligase n=5 Tax=Bifidobacterium RepID=E3EN41_BIFBS
L2_023_000G1_scaffold_458_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31030..32067)
DNA (1038bp) protein (346aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Phosphoribosylformylglycinamidine cyclo-ligase n=2 Tax=Bifidobacterium bifidum RepID=E3EN40_BIFBS
purM; phosphoribosylformylglycinamidine cyclo-ligase
L2_023_000G1_scaffold_458_29
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32140..33648)
DNA (1509bp) protein (503aa)
purF; amidophosphoribosyl transferase (EC:2.4.2.14)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Amidophosphoribosyltransferase n=8 Tax=Bifidobacterium RepID=I3WJ21_BIFBI
L2_023_000G1_scaffold_458_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33830..35419
DNA (1590bp) protein (530aa)
ImpB/MucB/SamB family protein (EC:2.7.7.7)
DNA repair protein umuC n=2 Tax=Bifidobacterium bifidum RepID=E3EN38_BIFBS
DNA repair protein umuC {ECO:0000313|EMBL:ADO53472.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Displaying items 1-30 of 56 in total

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