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L2_023_000G1_scaffold_473

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_023_000G1_scaffold_473_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..105)
DNA (105bp) protein (35aa)
Reverse rubrerythrin-1 n=1 Tax=Clostridium difficile DA00273 RepID=T3XYF1_CLODI
ruberythrin
Putative rubrerythrin {ECO:0000313|EMBL:CAJ68389.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_023_000G1_scaffold_473_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(328..1242)
DNA (915bp) protein (305aa)
EamA-like transporter family protein n=43 Tax=Clostridium difficile RepID=T2UUZ0_CLODI
putative transporter
Putative transporter {ECO:0000313|EMBL:CCL21650.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L2_023_000G1_scaffold_473_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1658..2539
DNA (882bp) protein (294aa)
Polysaccharide deacetylase family protein n=167 Tax=Clostridium difficile RepID=T3HDY0_CLODC
polysaccharide deacetylase
Polysaccharide deacetylase family protein {ECO:0000313|EMBL:EQI00353.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L2_023_000G1_scaffold_473_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2600..3808)
DNA (1209bp) protein (403aa)
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02007}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
Tyrosine--tRNA ligase n=170 Tax=Clostridium difficile RepID=C9XP46_CLODC
L2_023_000G1_scaffold_473_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4285..5274)
DNA (990bp) protein (330aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=G6BXH2_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CBE03874.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L2_023_000G1_scaffold_473_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5426..5866
DNA (441bp) protein (147aa)
Acetyltransferase family protein n=150 Tax=Clostridium difficile RepID=T3HBU9_CLODC
putative acyltransferase
Acetyltransferase family protein {ECO:0000313|EMBL:EQG75459.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_023_000G1_scaffold_473_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6193..6420
DNA (228bp) protein (76aa)
FeoA domain protein n=222 Tax=Clostridium difficile RepID=C9XMI8_CLODC
feoA2; ferrous ion transport protein
FeoA domain protein {ECO:0000313|EMBL:EQG76678.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_023_000G1_scaffold_473_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6446..8566
DNA (2121bp) protein (707aa)
Ferrous iron transport protein B n=7 Tax=Clostridium difficile RepID=T3HW14_CLODI
Ferrous iron transport protein B {ECO:0000313|EMBL:CDT22260.1}; Ferrous iron transport protein B homolog {ECO:0000313|EMBL:CDS86586.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ferrous ion transport protein
L2_023_000G1_scaffold_473_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8699..9517)
DNA (819bp) protein (273aa)
MerR regulatory family protein n=109 Tax=Clostridium difficile RepID=C9XMI6_CLODC
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:CCL21642.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L2_023_000G1_scaffold_473_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9736..9885
DNA (150bp) protein (50aa)
Uncharacterized protein n=7 Tax=Clostridium difficile RepID=T2W036_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CDS87038.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
conserved hypothetical protein
L2_023_000G1_scaffold_473_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10554..10733
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Clostridium difficile P41 RepID=U4X9X6_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQF23457.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
conserved hypothetical protein
L2_023_000G1_scaffold_473_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11582..13675)
DNA (2094bp) protein (698aa)
pdcA; diguanylate kinase signaling protein (EC:2.7.7.65)
Diguanylate cyclase domain protein n=23 Tax=Clostridium difficile RepID=T2YIN6_CLODI
Diguanylate cyclase domain protein {ECO:0000313|EMBL:EQE66293.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_023_000G1_scaffold_473_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14355..15251
DNA (897bp) protein (299aa)
Uncharacterized protein n=98 Tax=Clostridium difficile RepID=T3HEU0_CLODC
uncharacterised protein
Uncharacterized protein {ECO:0000313|EMBL:EQE66322.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_023_000G1_scaffold_473_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15226..16053
DNA (828bp) protein (276aa)
panB; Ketopantoate hydroxymethyltransferase (EC:2.1.2.11)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
3-methyl-2-oxobutanoate hydroxymethyltransferase n=105 Tax=Clostridium difficile RepID=PANB_CLOD6
L2_023_000G1_scaffold_473_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16072..16920
DNA (849bp) protein (283aa)
panC; Pantothenate synthetase (EC:6.3.2.1)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247609}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247611};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247610}; Pantoate-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00158}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
Pantothenate synthetase n=122 Tax=Clostridium difficile RepID=PANC_CLOD6
L2_023_000G1_scaffold_473_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17331..17513
DNA (183bp) protein (61aa)
Uncharacterized protein n=203 Tax=Clostridium difficile RepID=T3HCD8_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQG75817.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_023_000G1_scaffold_473_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18345..19259
DNA (915bp) protein (305aa)
Uncharacterized protein n=143 Tax=Clostridium difficile RepID=T3HEL1_CLODC
cotB; spore coat protein
Uncharacterized protein {ECO:0000313|EMBL:EQE66311.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_023_000G1_scaffold_473_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19649..20296
DNA (648bp) protein (216aa)
Uncharacterized protein n=155 Tax=Clostridium difficile RepID=G6B5K3_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQG76784.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
hypothetical protein
L2_023_000G1_scaffold_473_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20463..21062)
DNA (600bp) protein (200aa)
Uncharacterized protein n=152 Tax=Clostridium difficile RepID=G6BXF8_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ29241.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
intron RNA domain IV
L2_023_000G1_scaffold_473_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21037..21936)
DNA (900bp) protein (300aa)
4Fe-4S binding domain protein n=7 Tax=Clostridium difficile RepID=T2VXC9_CLODI
4Fe-4S binding domain protein {ECO:0000313|EMBL:CDS86564.1}; Putative iron-sulfur binding protein {ECO:0000313|EMBL:CDT22104.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
putative iron-sulfur binding protein
L2_023_000G1_scaffold_473_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21947..22096)
DNA (150bp) protein (50aa)
Uncharacterized protein n=186 Tax=Clostridium difficile RepID=C9XKW9_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQI00334.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L2_023_000G1_scaffold_473_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22089..22673)
DNA (585bp) protein (195aa)
AhpC/TSA family protein n=139 Tax=Clostridium difficile RepID=T3HAC5_CLODC
putative thioredoxin
Putative thioredoxin {ECO:0000313|EMBL:CDS86560.1}; Thioredoxin {ECO:0000313|EMBL:CKH05557.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_023_000G1_scaffold_473_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23062..24387
DNA (1326bp) protein (442aa)
EA protein n=35 Tax=Clostridium difficile RepID=Q7WZ38_CLODI
putative drug/sodium antiporter, MATE family
Putative drug/sodium antiporter, MATE family {ECO:0000313|EMBL:CAJ68370.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_023_000G1_scaffold_473_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24482..25276)
DNA (795bp) protein (265aa)
ABC-type transport system, multidrug-family permease n=120 Tax=Clostridium difficile RepID=Q18C23_CLOD6
ABC transporter permease
ABC-type transport system, multidrug-family permease {ECO:0000313|EMBL:CCL29650.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_023_000G1_scaffold_473_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25277..26152)
DNA (876bp) protein (292aa)
ABC-type transport system, multidrug-family ATP-binding protein {ECO:0000313|EMBL:CDT22041.1}; EC=3.6.3.- {ECO:0000313|EMBL:CDT22041.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ABC-type transport system, multidrug-familyATP-binding protein (EC:3.6.3.-)
ABC transporter family protein n=7 Tax=Clostridium difficile RepID=T3HW67_CLODI
L2_023_000G1_scaffold_473_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26156..26524)
DNA (369bp) protein (123aa)
Bacterial regulatory s, gntR family protein n=204 Tax=Clostridium difficile RepID=C9XJA4_CLODC
transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:CCL29648.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_023_000G1_scaffold_473_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26707..27366)
DNA (660bp) protein (220aa)
Deoxyribose-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202}; Short=DERA {ECO:0000256|HAMAP-Rule:MF_00114};; EC=4.1.2.4 {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202};; 2-deoxy-D-ribose 5-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114}; Phosphodeoxyriboaldolase {ECO:0000256|HAMAP-Rule:MF_00114}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Deoxyribose-phosphate aldolase n=182 Tax=Clostridium difficile RepID=DEOC_CLOD6
deoC; deoxyribose-phosphate aldolase
L2_023_000G1_scaffold_473_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27402..28946)
DNA (1545bp) protein (515aa)
Integral membrane protein MviN n=8 Tax=Clostridium difficile RepID=T2VWS0_CLODI
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
virulence factor MviN-like protein
L2_023_000G1_scaffold_473_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29420..30304)
DNA (885bp) protein (295aa)
RNA polymerase sigma factor n=1 Tax=Clostridium difficile (strain 630) RepID=Q18C16_CLOD6
rpoD2; RNA polymerase sigma factor rpoD
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L2_023_000G1_scaffold_473_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30595..31071)
DNA (477bp) protein (159aa)
Uncharacterized protein n=132 Tax=Clostridium difficile RepID=D5Q6E9_CLODI
Type I restriction enzyme R family protein {ECO:0000313|EMBL:EQG75986.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
uncharacterised protein
Displaying items 1-30 of 53 in total

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