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L2_023_000G1_scaffold_517

Search features with annotation key words

Displaying items 1-30 of 108 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_023_000G1_scaffold_517_1
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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134..787
DNA (654bp) protein (218aa)
Putative uncharacterized protein n=1 Tax=Clostridium clostridioforme 2_1_49FAA RepID=G5I146_9CLOT
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EGJ45513.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_023_000G1_scaffold_517_2
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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971..1198
DNA (228bp) protein (76aa)
Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4K8D0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL01093.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L2_023_000G1_scaffold_517_3

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1195..1566
DNA (372bp) protein (124aa)
Bacterial mobilization protein n=1 Tax=gut metagenome RepID=J9GL80_9ZZZZ
Bacterial mobilization protein {ECO:0000313|EMBL:EJX08612.1}; TaxID=749906 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="gut metagenome.;"
L2_023_000G1_scaffold_517_4
unknown

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1559..1681
DNA (123bp) protein (41aa)

This feature has no annotations

L2_023_000G1_scaffold_517_5
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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1802..3544
DNA (1743bp) protein (581aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6UBT7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC68217.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
Site-specific recombinases, DNA invertase Pin homologs
L2_023_000G1_scaffold_517_6
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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4184..6571
DNA (2388bp) protein (796aa)
Anaerobic ribonucleoside-triphosphate reductase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFK7_9FIRM
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:EGJ46227.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
anaerobic ribonucleoside triphosphate reductase
L2_023_000G1_scaffold_517_7
Clostridium hathewayi CAG:224, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6711..7988
DNA (1278bp) protein (426aa)
UPF0597 protein BN544_00765 n=1 Tax=Clostridium hathewayi CAG:224 RepID=R5TUV2_9CLOT
UPF0597 protein BN544_00765 {ECO:0000256|HAMAP-Rule:MF_01845}; TaxID=1263067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium hathewayi CAG:224.;"
hypothetical protein
L2_023_000G1_scaffold_517_8
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8114..9841)
DNA (1728bp) protein (576aa)
pgm; phosphoglucomutase (EC:5.4.2.2)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFB9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46139.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_023_000G1_scaffold_517_9
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10008..10490)
DNA (483bp) protein (161aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFB8_9FIRM
hypothetical protein
L2_023_000G1_scaffold_517_10
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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comp(10484..11332)
DNA (849bp) protein (283aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YHT1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL14766.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
metallo beta lactamase family protein
L2_023_000G1_scaffold_517_11
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11442..12734)
DNA (1293bp) protein (431aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFB6_9FIRM
L2_023_000G1_scaffold_517_12
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13010..14206)
DNA (1197bp) protein (399aa)
hemN; oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22)
Oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFB5_9FIRM
Oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:EGJ46135.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_023_000G1_scaffold_517_13
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14329..14931)
DNA (603bp) protein (201aa)
Recombination protein RecR n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFY5_9FIRM
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
recR; recombination protein RecR
L2_023_000G1_scaffold_517_14
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15015..15659)
DNA (645bp) protein (215aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
rpe; ribulose-5-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFY4_9FIRM
L2_023_000G1_scaffold_517_15
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15939..17159)
DNA (1221bp) protein (407aa)
threonine dehydratase, medium form (EC:4.3.1.19)
Threonine ammonia-lyase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFY2_9FIRM
Threonine ammonia-lyase {ECO:0000313|EMBL:EGJ45843.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_023_000G1_scaffold_517_16
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17449..18015
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:115 RepID=R5LIH7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY72936.1}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
hypothetical protein
L2_023_000G1_scaffold_517_17
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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18150..18581
DNA (432bp) protein (144aa)
Flavodoxin n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P759_9FIRM
Flavodoxin {ECO:0000313|EMBL:EDS13034.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
flavodoxin, short chain
L2_023_000G1_scaffold_517_18
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18736..19485
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFY1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45842.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_023_000G1_scaffold_517_19
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19576..20799
DNA (1224bp) protein (408aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFX9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45840.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_023_000G1_scaffold_517_20
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20868..21911
DNA (1044bp) protein (348aa)
Uncharacterized protein (Fragment) n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFX8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45839.1}; Flags: Fragment;; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_023_000G1_scaffold_517_21
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22115..23431
DNA (1317bp) protein (439aa)
Acetyl-CoA hydrolase/transferase n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZP59_9CLOT
Acetyl-CoA hydrolase/transferase {ECO:0000313|EMBL:CDD45134.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Acetyl-CoA hydrolase
L2_023_000G1_scaffold_517_22
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23530..24075)
DNA (546bp) protein (182aa)
Nitroreductase family protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0BY20_9CLOT
Nitroreductase family protein {ECO:0000313|EMBL:EEG75177.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
Nitroreductase
L2_023_000G1_scaffold_517_23
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24184..26940)
DNA (2757bp) protein (919aa)
Protein translocase subunit SecA n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XA99_9FIRM
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
secA; preprotein translocase SecA subunit
L2_023_000G1_scaffold_517_24
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27534..28949
DNA (1416bp) protein (472aa)
AGCS family alanine or glycine:cation symporter n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XA98_9FIRM
AGCS family alanine or glycine:cation symporter {ECO:0000313|EMBL:EGJ47276.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
amino acid carrier protein
L2_023_000G1_scaffold_517_25
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29219..29935
DNA (717bp) protein (239aa)
Pyruvate formate-lyase-activating enzyme {ECO:0000256|RuleBase:RU362053}; EC=1.97.1.4 {ECO:0000256|RuleBase:RU362053};; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
Pyruvate formate-lyase 1-activating enzyme n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TI00_9FIRM
pyruvate formate-lyase activating enzyme
L2_023_000G1_scaffold_517_26
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29991..32228
DNA (2238bp) protein (746aa)
formate acetyltransferase 1 (EC:2.3.1.54)
Formate acetyltransferase n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6T7G5_9FIRM
Formate acetyltransferase {ECO:0000313|EMBL:CDC69348.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
L2_023_000G1_scaffold_517_27
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32326..33606)
DNA (1281bp) protein (427aa)
GTPase Obg n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAA5_9FIRM
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
obg; GTP-binding protein Obg
L2_023_000G1_scaffold_517_28
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33640..34062)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAA6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47284.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Predicted DNA-binding protein with PD1-like DNA-binding motif
L2_023_000G1_scaffold_517_29
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(34130..34414)
DNA (285bp) protein (95aa)
50S ribosomal protein L27 n=3 Tax=Clostridiales RepID=G9YR26_9FIRM
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
rpmA; 50S ribosomal protein L27
L2_023_000G1_scaffold_517_30
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34419..34748)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAA8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47286.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
Displaying items 1-30 of 108 in total

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