ggKbase home page

L2_023_000G1_scaffold_564

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_023_000G1_scaffold_564_1
unknown

Not on your lists

comp(1..195)
DNA (195bp) protein (65aa)

This feature has no annotations

L2_023_000G1_scaffold_564_2
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(176..1573)
DNA (1398bp) protein (466aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD26_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46722.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative efflux protein, MATE family
L2_023_000G1_scaffold_564_3
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1668..1928)
DNA (261bp) protein (87aa)
Pro-sigmaK processing inhibitor BofA n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD44_9FIRM
Pro-sigmaK processing inhibitor BofA {ECO:0000313|EMBL:EGJ46740.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_023_000G1_scaffold_564_4
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1925..2161)
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD45_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46741.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_023_000G1_scaffold_564_5
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2327..3562)
DNA (1236bp) protein (412aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD46_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46742.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_023_000G1_scaffold_564_6
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3773..4723
DNA (951bp) protein (317aa)
Biotin synthase {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00009987}; EC=2.8.1.6 {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00250466};; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
Biotin synthase n=1 Tax=Clostridium sp. CAG:43 RepID=R7AGF7_9CLOT
biotin synthase
L2_023_000G1_scaffold_564_7
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4747..5322
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD47_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46743.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_023_000G1_scaffold_564_8
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5808..6839
DNA (1032bp) protein (344aa)
ABC transporter substrate-binding protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9L5_9FIRM
ABC transporter substrate-binding protein {ECO:0000313|EMBL:EGJ48341.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_023_000G1_scaffold_564_9
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6926..7831
DNA (906bp) protein (302aa)
ABC transporter permease n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9L4_9FIRM
ABC transporter permease {ECO:0000313|EMBL:EGJ48340.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_023_000G1_scaffold_564_10
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7833..8633
DNA (801bp) protein (267aa)
ABC transporter ATP-binding protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9L3_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EGJ48339.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
ABC-type uncharacterized transport system, ATPase component
L2_023_000G1_scaffold_564_11
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8730..10472)
DNA (1743bp) protein (581aa)
Xenobiotic-transporting ATPase (EC:3.6.3.44)
ABC transporter n=4 Tax=Clostridiales RepID=E5XFB5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ27237.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
L2_023_000G1_scaffold_564_12
Lachnospiraceae bacterium 6_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10474..12198)
DNA (1725bp) protein (575aa)
Xenobiotic-transporting ATPase (EC:3.6.3.44)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 6_1_63FAA RepID=F3ADZ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG83880.1}; TaxID=658083 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_63FAA.;"
L2_023_000G1_scaffold_564_13
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12367..13185
DNA (819bp) protein (273aa)
Transcriptional regulator, MerR family n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2D1L0_CLOSY
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ERI73431.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
MerR family transcriptional regulator
L2_023_000G1_scaffold_564_14
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13284..14120)
DNA (837bp) protein (279aa)
Two-component system, response regulator YcbB n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCU9_9FIRM
Two-component system, response regulator YcbB {ECO:0000313|EMBL:EGJ46645.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
FOG: CheY-like receiver
L2_023_000G1_scaffold_564_15
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14117..15448)
DNA (1332bp) protein (444aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (EC:2.7.13.3)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCU8_9FIRM
L2_023_000G1_scaffold_564_16
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15616..15897)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGY8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45627.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_023_000G1_scaffold_564_17
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16131..18008
DNA (1878bp) protein (626aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Ruminococcaceae bacterium D16 RepID=T5RY57_9FIRM
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
L2_023_000G1_scaffold_564_18
Flavobacterium reichenbachii, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

18025..18267
DNA (243bp) protein (81aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI00037CD149
Uncharacterized protein {ECO:0000313|EMBL:KFF02215.1}; TaxID=362418 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium reichenbachii.;"
L2_023_000G1_scaffold_564_19
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18276..19169
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE52_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46352.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_023_000G1_scaffold_564_20
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19273..20319)
DNA (1047bp) protein (349aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGB8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45722.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_023_000G1_scaffold_564_21
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20721..21713
DNA (993bp) protein (331aa)
birA; transcriptional regulator/biotin--[acetyl-CoA-carboxylase] ligase (EC:6.3.4.15)
Biotin-[acetyl-CoA-carboxylase] ligase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEV7_9FIRM
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_023_000G1_scaffold_564_22
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22152..23333
DNA (1182bp) protein (394aa)
Putative alanine dehydrogenase n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C4P5_9CLOT
Putative alanine dehydrogenase {ECO:0000313|EMBL:EEG73038.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
ald; hypothetical protein
L2_023_000G1_scaffold_564_23
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23407..24843
DNA (1437bp) protein (479aa)
Na+/H+ antiporter family protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C4P6_9CLOT
Na+/H+ antiporter family protein {ECO:0000313|EMBL:EEG73039.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
Na+/H+ antiporter
L2_023_000G1_scaffold_564_24
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25176..25463
DNA (288bp) protein (96aa)
Transposase, IS4 family n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DAL5_CLOS4
Transposase, IS4 family {ECO:0000313|EMBL:ERI99849.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
putative transposase for insertion sequence element
L2_023_000G1_scaffold_564_25
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25558..26388
DNA (831bp) protein (277aa)
Thymidylate synthase {ECO:0000256|SAAS:SAAS00215270}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00273274};; EC=2.1.1.45 {ECO:0000256|SAAS:SAAS00215290};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
thyA; thymidylate synthase (EC:2.1.1.45)
Thymidylate synthase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XA25_9FIRM
L2_023_000G1_scaffold_564_26
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26427..26936
DNA (510bp) protein (170aa)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Dihydrofolate reductase (EC:1.5.1.3)
Dihydrofolate reductase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XA26_9FIRM
L2_023_000G1_scaffold_564_27
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27042..27386)
DNA (345bp) protein (115aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=R7AB26_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK95650.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_023_000G1_scaffold_564_28
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27456..28625)
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDH6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46872.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
5-bromo-4-chloroindolyl phosphate hydrolysis protein.
L2_023_000G1_scaffold_564_29
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29245..31086
DNA (1842bp) protein (614aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDH8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46874.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative hydrolase
L2_023_000G1_scaffold_564_30
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31109..31783
DNA (675bp) protein (225aa)
TIGR02453 family protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=T5RIJ9_9FIRM
TIGR02453 family protein {ECO:0000313|EMBL:EQN60306.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
Displaying items 1-30 of 49 in total

View Taxonomy