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L2_023_126G1_scaffold_68

Search features with annotation key words

Displaying items 1-30 of 89 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_023_126G1_scaffold_68_1
unknown

Not on your lists

133..315
DNA (183bp) protein (61aa)

This feature has no annotations

L2_023_126G1_scaffold_68_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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548..964
DNA (417bp) protein (139aa)
Helix-turn-helix n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KJA9_9FIRM
Helix-turn-helix.
Helix-turn-helix {ECO:0000313|EMBL:CBL10439.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_023_126G1_scaffold_68_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1369..1599
DNA (231bp) protein (77aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KJA8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL10438.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_023_126G1_scaffold_68_4
Faecalitalea cylindroides, Faecalitalea, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(1579..2475)
DNA (897bp) protein (299aa)
Retron-type reverse transcriptase n=1 Tax=[Eubacterium] cylindroides T2-87 RepID=D4JD56_9FIRM
Retron-type reverse transcriptase
Retron-type reverse transcriptase {ECO:0000313|EMBL:CBK88128.1}; TaxID=717960 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Faecalitalea.;" source="Faecalitalea cylindroides T2-87.;"
L2_023_126G1_scaffold_68_5
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3134..3625)
DNA (492bp) protein (164aa)
TraG family protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0GAD2_9FIRM
TraG family protein {ECO:0000313|EMBL:EDR45464.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
Type IV secretory pathway, VirD4 components
L2_023_126G1_scaffold_68_6
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3774..5675)
DNA (1902bp) protein (634aa)
RecA-family ATPase n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E4A7_9FIRM
RecA-family ATPase {ECO:0000313|EMBL:CBK90247.1}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
RecA-family ATPase
L2_023_126G1_scaffold_68_7
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5692..7161)
DNA (1470bp) protein (490aa)
MobA/MobL family protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H1D2_9FIRM
MobA/MobL family protein {ECO:0000313|EMBL:EEU98142.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
hypothetical protein
L2_023_126G1_scaffold_68_8
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7434..7727)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CC02_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI81548.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L2_023_126G1_scaffold_68_9

Not on your lists

comp(7812..8642)
DNA (831bp) protein (277aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1UII3_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC79849.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L2_023_126G1_scaffold_68_10
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(8755..9051)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Clostridium innocuum 2959 RepID=N9WL28_CLOIN
Uncharacterized protein {ECO:0000313|EMBL:ENY84328.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
hypothetical protein
L2_023_126G1_scaffold_68_11
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9185..9376)
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2DHM9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI80987.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L2_023_126G1_scaffold_68_12
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9456..11306)
DNA (1851bp) protein (617aa)
Site-specific recombinases, DNA invertase Pin homologs n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E4B3_9FIRM
Site-specific recombinases, DNA invertase Pin homologs {ECO:0000313|EMBL:CBK90253.1}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
Site-specific recombinases, DNA invertase Pin homologs
L2_023_126G1_scaffold_68_13
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11354..11665)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFP0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46260.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Type IV secretory pathway, VirD4 components
L2_023_126G1_scaffold_68_14
Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(11662..12162)
DNA (501bp) protein (167aa)
Uncharacterized protein n=11 Tax=Firmicutes RepID=D1PJ05_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFP61916.1}; TaxID=658659 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 3_1_53.;"
hypothetical protein
L2_023_126G1_scaffold_68_15
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12249..12668)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFN8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46258.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_023_126G1_scaffold_68_16
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12681..12992)
DNA (312bp) protein (104aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=F4XFN7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46257.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_023_126G1_scaffold_68_17
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13015..13761)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFN6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46256.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Prophage antirepressor
L2_023_126G1_scaffold_68_18
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13796..14665)
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFN5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46255.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_023_126G1_scaffold_68_19
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14733..14924)
DNA (192bp) protein (64aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=D3ANJ8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFC96606.1}; TaxID=566550 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi DSM 13479.;"
hypothetical protein
L2_023_126G1_scaffold_68_20
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14948..15223)
DNA (276bp) protein (92aa)
Uncharacterized protein n=2 Tax=Ruminococcaceae RepID=F4XFN3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46253.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_023_126G1_scaffold_68_21
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15236..16162)
DNA (927bp) protein (309aa)
ParB family chromosome partitioning protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFN2_9FIRM
ParB family chromosome partitioning protein {ECO:0000313|EMBL:EGJ46252.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
parB-like partition protein
L2_023_126G1_scaffold_68_22
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16119..16940)
DNA (822bp) protein (274aa)
Chromosome partitioning protein n=2 Tax=Clostridiales RepID=F4XFN1_9FIRM
Chromosome partitioning protein {ECO:0000313|EMBL:ENZ08366.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
ATPases involved in chromosome partitioning
L2_023_126G1_scaffold_68_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17060..18796)
DNA (1737bp) protein (579aa)
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:EEU99191.1}; EC=2.1.1.- {ECO:0000313|EMBL:EEU99191.1};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
23S rRNA m(5)U-1939 methyltransferase (EC:2.1.1.-)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GG53_9FIRM
L2_023_126G1_scaffold_68_24
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18799..19749)
DNA (951bp) protein (317aa)
HDIG domain protein n=2 Tax=Roseburia RepID=C7GG54_9FIRM
HD domain protein {ECO:0000313|EMBL:CDA54299.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
uncharacterized domain HDIG
L2_023_126G1_scaffold_68_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19751..19921)
DNA (171bp) protein (57aa)
Putative uncharacterized protein n=2 Tax=Roseburia intestinalis RepID=D4KNX4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL08576.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_023_126G1_scaffold_68_26
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19976..21553)
DNA (1578bp) protein (526aa)
Putative serine protease n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AQK6_9FIRM
Putative serine protease {ECO:0000313|EMBL:CDA54298.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
L2_023_126G1_scaffold_68_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21798..24224
DNA (2427bp) protein (809aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Endonuclease MutS2 n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KNX3_9FIRM
MutS2 family protein
L2_023_126G1_scaffold_68_28
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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24342..25046
DNA (705bp) protein (235aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=2 Tax=Roseburia RepID=D4KNX2_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CDA54296.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_023_126G1_scaffold_68_29
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25043..26479
DNA (1437bp) protein (479aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Signal transduction histidine kinase n=2 Tax=Roseburia RepID=D4KNX1_9FIRM
Signal transduction histidine kinase
L2_023_126G1_scaffold_68_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26546..27046)
DNA (501bp) protein (167aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUH0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL11010.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Displaying items 1-30 of 89 in total

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