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L2_023_126G1_scaffold_226

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_023_126G1_scaffold_226_1
unknown

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comp(243..470)
DNA (228bp) protein (76aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0003710D1B
L2_023_126G1_scaffold_226_2
unknown

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comp(565..774)
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI000382AC49
L2_023_126G1_scaffold_226_3
unknown

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945..1082
DNA (138bp) protein (46aa)

This feature has no annotations

L2_023_126G1_scaffold_226_4
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1177..1617
DNA (441bp) protein (147aa)
RNA polymerase sigma factor n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6PCU6_9FIRM
RNA polymerase sigma factor {ECO:0000313|EMBL:CDC16386.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
RNA polymerase sigma factor, sigma-70 family
L2_023_126G1_scaffold_226_5
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1958..3265)
DNA (1308bp) protein (436aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002DAD92C
Uncharacterized protein {ECO:0000313|EMBL:EEG93010.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
hypothetical protein
L2_023_126G1_scaffold_226_6
Firmicutes bacterium CAG:95, Firmicutes, Bacteria

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3416..3976
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002E78DB7
Uncharacterized protein {ECO:0000313|EMBL:CDF07471.1}; TaxID=1262988 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:95.;"
L2_023_126G1_scaffold_226_7
unknown

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4022..4681
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002E808D6
L2_023_126G1_scaffold_226_8
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5019..5831
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI000368AFE9
Uncharacterized protein {ECO:0000313|EMBL:EEU98290.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
hypothetical protein
L2_023_126G1_scaffold_226_9
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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5847..6104
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002FBE247
Sugar-binding domain protein {ECO:0000313|EMBL:EDM85893.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
transcriptional regulator, LacI family
L2_023_126G1_scaffold_226_10
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6192..6851
DNA (660bp) protein (220aa)
membrane protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0003194056
Uncharacterized protein {ECO:0000313|EMBL:EES78041.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Predicted membrane protein
L2_023_126G1_scaffold_226_11
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6914..8626)
DNA (1713bp) protein (571aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CM61_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD78463.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
ammonium transporter
L2_023_126G1_scaffold_226_12
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8925..11024)
DNA (2100bp) protein (700aa)
L-glutamine synthetase (EC:6.3.1.2)
Glutamine synthetase catalytic region n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CJR3_9FIRM
Glutamine synthetase catalytic region {ECO:0000313|EMBL:CDD78464.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L2_023_126G1_scaffold_226_13
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11441..12862
DNA (1422bp) protein (474aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
amidophosphoribosyltransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CKG7_9FIRM
L2_023_126G1_scaffold_226_14
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13132..13359
DNA (228bp) protein (76aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JBP0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD78466.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
PTS HPr component phosphorylation site.
L2_023_126G1_scaffold_226_15
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13733..15358
DNA (1626bp) protein (542aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
CTP synthase (EC:6.3.4.2)
CTP synthase n=2 Tax=Ruminococcus RepID=C6JBN9_9FIRM
L2_023_126G1_scaffold_226_16
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15375..19928
DNA (4554bp) protein (1518aa)
Glutamate synthase domain 2 (EC:1.4.1.13 1.4.1.14)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBN8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78025.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L2_023_126G1_scaffold_226_17
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20050..21534
DNA (1485bp) protein (495aa)
glutamate synthase (NADH) small subunit (EC:1.4.1.13 1.4.1.14)
Glutamate synthase, NADH/NADPH, small subunit n=2 Tax=Ruminococcus RepID=C6JBN7_9FIRM
Glutamate synthase, NADH/NADPH, small subunit {ECO:0000313|EMBL:EES78024.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L2_023_126G1_scaffold_226_18
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21873..22130
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBN0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78017.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
YcfA-like protein.
L2_023_126G1_scaffold_226_19
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22114..22476
DNA (363bp) protein (121aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=C6JBM9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80233.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
hypothetical protein
L2_023_126G1_scaffold_226_20
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22769..24091
DNA (1323bp) protein (441aa)
Glutamine synthetase (EC:6.3.1.2)
Glutamine synthetase, type I n=2 Tax=Ruminococcus RepID=C6JBM8_9FIRM
Glutamine synthetase, type I {ECO:0000313|EMBL:EES78015.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
L2_023_126G1_scaffold_226_21
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24340..24894
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBM7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES78014.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Response regulator with putative antiterminator output domain
L2_023_126G1_scaffold_226_22
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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25363..26694
DNA (1332bp) protein (444aa)
aspartyl-tRNA synthetase, archaeal type (EC:6.1.1.23)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R7CS20_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD80228.1}; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
L2_023_126G1_scaffold_226_23
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26804..27097
DNA (294bp) protein (98aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit (EC:6.3.5.7 6.3.5.6)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBM5_9FIRM
L2_023_126G1_scaffold_226_24
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27109..28578
DNA (1470bp) protein (490aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A (EC:6.3.5.7 6.3.5.- 6.3.5.6)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=2 Tax=Ruminococcus RepID=C6JBM4_9FIRM
L2_023_126G1_scaffold_226_25
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28578..30017
DNA (1440bp) protein (480aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00247567}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC:6.3.5.6 6.3.5.7 6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CQH3_9FIRM
L2_023_126G1_scaffold_226_26
Ruminococcus sp. CAG:9, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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30241..31455
DNA (1215bp) protein (405aa)
LL-diaminopimelate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642}; Short=DAP-AT {ECO:0000256|HAMAP-Rule:MF_01642};; Short=DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; Short=LL-DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; EC=2.6.1.83 {ECO:0000256|HAMAP-Rule:MF_01642};; TaxID=1262967 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:9.;"
LL-diaminopimelate aminotransferase apoenzyme (EC:2.6.1.83)
LL-diaminopimelate aminotransferase n=1 Tax=Ruminococcus sp. CAG:9 RepID=R7CJH5_9FIRM
L2_023_126G1_scaffold_226_27
Faecalitalea cylindroides, Faecalitalea, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(31896..32147)
DNA (252bp) protein (84aa)
Relaxase/Mobilisation nuclease domain n=1 Tax=[Eubacterium] cylindroides T2-87 RepID=D4JD79_9FIRM
Relaxase/Mobilisation nuclease domain.
Relaxase/Mobilisation nuclease domain {ECO:0000313|EMBL:CBK88151.1}; TaxID=717960 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Faecalitalea.;" source="Faecalitalea cylindroides T2-87.;"
L2_023_126G1_scaffold_226_28
[Bacteroides] pectinophilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(32202..32963)
DNA (762bp) protein (254aa)
Putative uncharacterized protein n=1 Tax=[Bacteroides] pectinophilus ATCC 43243 RepID=B7APP2_9FIRM
Putative uncharacterized protein {ECO:0000313|EMBL:EEC58516.1}; TaxID=483218 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="[Bacteroides] pectinophilus ATCC 43243.;"
hypothetical protein
Displaying 28 items

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