ggKbase home page

L2_023_126G1_scaffold_5

Search features with annotation key words

Displaying items 1-30 of 172 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_023_126G1_scaffold_5_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(108..1145)
DNA (1038bp) protein (346aa)
Aminopeptidase, M42 family n=1 Tax=Clostridium perfringens D str. JGS1721 RepID=B1V2T4_CLOPF
aminopeptidase
Aminopeptidase, M42 family {ECO:0000313|EMBL:EDT71909.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
L2_023_126G1_scaffold_5_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1220..3097)
DNA (1878bp) protein (626aa)
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein n=2 Tax=Clostridium difficile RepID=T2YYG2_CLODI
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein {ECO:0000313|EMBL:EQE70230.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
htpG; Heat shock protein 90 (Heat shock proteinHtpG)(High temperature protein G)
L2_023_126G1_scaffold_5_3
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3204..3815)
DNA (612bp) protein (204aa)
UPI0003D66826 related cluster n=1 Tax=unknown RepID=UPI0003D66826
Uncharacterized protein {ECO:0000313|EMBL:KJZ88667.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
hypothetical protein
L2_023_126G1_scaffold_5_4
Clostridium sp. CAG:265, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3858..4358)
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:265 RepID=R6KMJ7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB74730.1}; TaxID=1262787 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:265.;"
hypothetical protein
L2_023_126G1_scaffold_5_5
Clostridium sp. CAG:265, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4368..4916)
DNA (549bp) protein (183aa)
Conserved hypothetical phage-related protein n=1 Tax=Clostridium sp. CAG:265 RepID=R6KXT0_9CLOT
Conserved hypothetical phage-related protein {ECO:0000313|EMBL:CDB74731.1}; TaxID=1262787 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:265.;"
hypothetical protein
L2_023_126G1_scaffold_5_6
Clostridium sp. CAG:265, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5118..6068)
DNA (951bp) protein (317aa)
Polysaccharide deacetylase family protein n=1 Tax=Clostridium sp. CAG:265 RepID=R6KVZ0_9CLOT
Polysaccharide deacetylase family protein {ECO:0000313|EMBL:CDB74076.1}; TaxID=1262787 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:265.;"
polysaccharide deacetylase
L2_023_126G1_scaffold_5_7
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6172..6477)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QBP7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKY25115.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
hypothetical protein
L2_023_126G1_scaffold_5_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6488..7690)
DNA (1203bp) protein (401aa)
DHHA1 domain protein n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BL21_CLOPF
DHHA1 domain protein {ECO:0000313|EMBL:EDS79527.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
DHH domain-containing protein
L2_023_126G1_scaffold_5_9
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7702..9201)
DNA (1500bp) protein (500aa)
Transcriptional regulator, GntR family with aminotransferase domain containing protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7M4C2_9CLOT
Transcriptional regulator, GntR family with aminotransferase domain containing protein {ECO:0000313|EMBL:EHJ01263.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
yisV2; HTH-type transcriptional regulator YisV
L2_023_126G1_scaffold_5_10
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9538..10125)
DNA (588bp) protein (196aa)
BioY family protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MUI8_CLOSA
BioY family protein
BioY family protein {ECO:0000313|EMBL:AGX43326.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L2_023_126G1_scaffold_5_11
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10204..11367)
DNA (1164bp) protein (388aa)
NADH-dependent butanol dehydrogenase a (EC:1.1.1.-)
NADH-dependent butanol dehydrogenase n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V5D0_CLOBA
Butanol dehydrogenase {ECO:0000313|EMBL:KIL06746.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
L2_023_126G1_scaffold_5_12
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11615..12208
DNA (594bp) protein (198aa)
RNA-binding region-containing protein (RNP-1) n=1 Tax=Clostridium sp. DL-VIII RepID=G7LZG7_9CLOT
RNA-binding region-containing protein (RNP-1) {ECO:0000313|EMBL:EHI97898.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
hypothetical protein
L2_023_126G1_scaffold_5_13
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12263..14452)
DNA (2190bp) protein (730aa)
Transglutaminase-like protein n=1 Tax=Ruminococcus albus 8 RepID=E9SCA9_RUMAL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM69483.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
L2_023_126G1_scaffold_5_14
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14454..15587)
DNA (1134bp) protein (378aa)
Putative uncharacterized protein n=1 Tax=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) RepID=A3DEN5_CLOTH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABN52414.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L2_023_126G1_scaffold_5_15
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15580..16521)
DNA (942bp) protein (314aa)
ATPase associated with various cellular activities AAA_3 n=7 Tax=Clostridium thermocellum RepID=A3DEN6_CLOTH
yeaC3; putative protein YeaC
Uncharacterized protein {ECO:0000313|EMBL:CDM69485.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
L2_023_126G1_scaffold_5_16
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16620..16925)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HIQ1_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY83797.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_023_126G1_scaffold_5_17
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17060..18517)
DNA (1458bp) protein (486aa)
Sucrose-6-phosphate dehydrogenase {ECO:0000313|EMBL:EDT13927.1}; EC=3.2.1.26 {ECO:0000313|EMBL:EDT13927.1};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
Sucrose-6-P hydrolase n=2 Tax=Clostridium perfringens RepID=Q8XK71_CLOPE
sacA; sucrose-6-P hydrolase
L2_023_126G1_scaffold_5_18
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18717..19115)
DNA (399bp) protein (133aa)
glyoxalase n=1 Tax=Clostridium sp. JC122 RepID=UPI0002897AEC
Glyoxalase family protein {ECO:0000313|EMBL:EKY27405.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
glyoxalase
L2_023_126G1_scaffold_5_19
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19175..19630)
DNA (456bp) protein (152aa)
Methylated-DNA--protein-cysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; EC=2.1.1.63 {ECO:0000256|HAMAP-Rule:MF_00772};; 6-O-methylguanine-DNA methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; O-6-methylguanine-DNA-alkyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
Methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Clostridium perfringens D str. JGS1721 RepID=B1V0H5_CLOPF
methylated-DNA-protein-cystein methyltransferase
L2_023_126G1_scaffold_5_20
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19757..20623)
DNA (867bp) protein (289aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086366}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
dapA4; dihydrodipicolinate synthase 2 (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Clostridium intestinale URNW RepID=U2NL07_9CLOT
L2_023_126G1_scaffold_5_21
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20953..22662)
DNA (1710bp) protein (570aa)
Alpha,alpha-phosphotrehalase {ECO:0000313|EMBL:EDS81070.1}; EC=3.2.1.93 {ECO:0000313|EMBL:EDS81070.1};; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
Alpha,alpha-phosphotrehalase n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BH17_CLOPF
alpha-glucosidase
L2_023_126G1_scaffold_5_22
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(22625..24517)
DNA (1893bp) protein (631aa)
transcriptional antiterminator BglG (EC:2.7.1.69)
HTH domain protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y3S8_9FIRM
HTH domain protein {ECO:0000313|EMBL:EEF69377.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
L2_023_126G1_scaffold_5_23
Enterococcus pallens, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24614..25714)
DNA (1101bp) protein (367aa)
PTS system, Fru family, IIC component n=1 Tax=Enterococcus pallens ATCC BAA-351 RepID=R2T0S4_9ENTE
PTS system, Fru family, IIC component {ECO:0000313|EMBL:EOH93854.1}; TaxID=1158607 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus pallens ATCC BAA-351.;"
PTS system, fructose-specific component family
L2_023_126G1_scaffold_5_24
Enterococcus pallens, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25762..26070)
DNA (309bp) protein (103aa)
PTS system, Fru family, IIB component n=1 Tax=Enterococcus pallens ATCC BAA-351 RepID=R2SE92_9ENTE
PTS system, Fru family, IIB component {ECO:0000313|EMBL:EOH93855.1}; TaxID=1158607 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus pallens ATCC BAA-351.;"
PTS system fructose-specific transporter subunit IIB
L2_023_126G1_scaffold_5_25
Bacillus ginsengihumi, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26073..26534)
DNA (462bp) protein (154aa)
Putative PTS IIA-like nitrogen-regulatory protein PtsN n=1 Tax=Clostridium sp. DL-VIII RepID=G7M9S6_9CLOT
PTS fructose transporter subunit IIA {ECO:0000313|EMBL:KHD84919.1}; TaxID=363870 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus ginsengihumi.;"
putative PTS system, fructose-specific IIA component
L2_023_126G1_scaffold_5_26
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26979..27881)
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9Y3L6_9CLOT
S1 RNA binding domain protein
S1 RNA binding domain protein {ECO:0000313|EMBL:AIY84438.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_023_126G1_scaffold_5_27
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27940..28932
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CA94_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOR26279.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
hypothetical protein
L2_023_126G1_scaffold_5_28
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29016..29348)
DNA (333bp) protein (111aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=M8K431_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ83035.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
putative membrane protein
L2_023_126G1_scaffold_5_29
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29597..30064
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9WH74_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ02441.1}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
transcriptional regulator, AsnC family
L2_023_126G1_scaffold_5_30
Clostridium sp. CAG:265, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30176..30382
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:265 RepID=R6KUU3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB74929.1}; TaxID=1262787 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:265.;"
hypothetical protein
Displaying items 1-30 of 172 in total

View Taxonomy