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L2_023_126G1_scaffold_375

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_023_126G1_scaffold_375_1
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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121..915
DNA (795bp) protein (265aa)
Putative uncharacterized protein n=1 Tax=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) RepID=Q0TSD8_CLOP1
Uncharacterized protein {ECO:0000313|EMBL:KEZ91745.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
hypothetical protein
L2_023_126G1_scaffold_375_2
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1016..1480
DNA (465bp) protein (155aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EGF4_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEG29430.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
hypothetical protein
L2_023_126G1_scaffold_375_3
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1752..1934
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9BYC5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOR19961.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
L2_023_126G1_scaffold_375_4
Clostridium sulfidigenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2175..3503
DNA (1329bp) protein (443aa)
multidrug transporter MATE n=1 Tax=Clostridium sp. JC122 RepID=UPI000288115F
Multidrug transporter MATE {ECO:0000313|EMBL:KEZ87073.1}; TaxID=318464 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sulfidigenes.;"
MATE efflux family protein
L2_023_126G1_scaffold_375_5
Clostridium sulfidigenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3537..3824
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Clostridium sp. JC122 RepID=UPI00028A2D50
Uncharacterized protein {ECO:0000313|EMBL:KEZ87074.1}; TaxID=318464 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sulfidigenes.;"
hypothetical protein
L2_023_126G1_scaffold_375_6
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3877..4431
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UG33_RUMA7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU21060.1}; TaxID=697329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO; 2250 / 7).;"
L2_023_126G1_scaffold_375_7
Clostridium sulfidigenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4553..5008
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H1Z1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KEZ87502.1}; TaxID=318464 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sulfidigenes.;"
hypothetical protein
L2_023_126G1_scaffold_375_8
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5147..5380)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YSK5_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ30420.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
IS1470, transposase
L2_023_126G1_scaffold_375_9
unknown

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5709..6026
DNA (318bp) protein (106aa)

This feature has no annotations

L2_023_126G1_scaffold_375_10
unknown

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6172..6318
DNA (147bp) protein (49aa)

This feature has no annotations

L2_023_126G1_scaffold_375_11
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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6563..7078
DNA (516bp) protein (172aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0NIS6_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN37011.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
L2_023_126G1_scaffold_375_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7092..7808
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens E str. JGS1987 RepID=B1BQ79_CLOPF
Uncharacterized protein {ECO:0000313|EMBL:EDT16088.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L2_023_126G1_scaffold_375_13
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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7925..8335
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AZM3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX46182.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
L2_023_126G1_scaffold_375_14
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8494..8814
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=U6Q1Q6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EJZ50462.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
L2_023_126G1_scaffold_375_15
Enterococcus durans, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(9038..9757)
DNA (720bp) protein (240aa)
GntR family transcriptional regulator n=1 Tax=Enterococcus durans RepID=UPI00032871A9
GntR family transcriptional regulator {ECO:0000313|EMBL:EMS76754.1}; TaxID=1288492 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus durans IPLA 655.;"
GntR family transcriptional regulator
L2_023_126G1_scaffold_375_16
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(9852..11162)
DNA (1311bp) protein (437aa)
PTS system, cellobiose-specific IIC component n=24 Tax=Enterococcus faecalis RepID=K8F5B0_ENTFL
PTS system, cellobiose-specific IIC component
Permease IIC component {ECO:0000256|PIRNR:PIRNR006351}; TaxID=565642 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis ATCC 4200.;"
L2_023_126G1_scaffold_375_17
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11179..12174)
DNA (996bp) protein (332aa)
Uncharacterized protein n=8 Tax=Enterococcus faecalis RepID=E0G0N8_ENTFL
Uncharacterized protein {ECO:0000313|EMBL:EEN72397.1}; TaxID=525271 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis ATCC 29200.;"
hypothetical protein
L2_023_126G1_scaffold_375_18
Coprobacillus sp. CAG:235, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(12175..12492)
DNA (318bp) protein (106aa)
PTS system cellobiose-specific transporter subunit IIB (EC:2.7.1.69)
PTS system, Lactose/Cellobiose specific IIB subunit n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2DFN8_9FIRM
PTS system lactose/cellobiose family IIB component {ECO:0000313|EMBL:CCZ25209.1}; TaxID=1262854 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:235.;"
L2_023_126G1_scaffold_375_19
Coprobacillus sp. CAG:183, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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12834..13826
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. D7 RepID=C3RI90_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ34893.1}; TaxID=1262853 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus; environmental samples.;" source="Coprobacillus sp. CAG:183.;"
transcriptional regulator with cupin sensor, AraC family
L2_023_126G1_scaffold_375_20
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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13909..15183
DNA (1275bp) protein (425aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. 29_1 RepID=E7G7R3_9FIRM
Permease IIC component {ECO:0000256|PIRNR:PIRNR006351}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
celB3; cellobiose permease IIC component CelB
L2_023_126G1_scaffold_375_21
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

15250..17811
DNA (2562bp) protein (854aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. 29_1 RepID=E7G7R4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFW05835.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
glycoside hydrolase
L2_023_126G1_scaffold_375_22
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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17890..19293
DNA (1404bp) protein (468aa)
rhamnulokinase (EC:2.7.1.5)
Rhamnulokinase n=2 Tax=Roseburia RepID=D4KUU5_9FIRM
Rhamnulokinase {ECO:0000313|EMBL:CDA56568.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_023_126G1_scaffold_375_23
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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19293..20546
DNA (1254bp) protein (418aa)
L-rhamnose isomerase {ECO:0000256|HAMAP-Rule:MF_00541}; EC=5.3.1.14 {ECO:0000256|HAMAP-Rule:MF_00541};; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
L-rhamnose isomerase (EC:5.3.1.14)
L-rhamnose isomerase n=3 Tax=Coprobacillus RepID=G9QY28_9FIRM
L2_023_126G1_scaffold_375_24
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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20556..21383
DNA (828bp) protein (276aa)
Rhamnulose-1-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00770, ECO:0000256|SAAS:SAAS00048955}; EC=4.1.2.19 {ECO:0000256|HAMAP-Rule:MF_00770, ECO:0000256|SAAS:SAAS00048955};; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
L-rhamnulose 1-phosphate aldolase (EC:4.1.2.19)
Rhamnulose-1-phosphate aldolase n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IUN4_9FIRM
L2_023_126G1_scaffold_375_25
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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21401..21673
DNA (273bp) protein (91aa)
6-phospho-beta-glucosidase AscB n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WIS0_9ACTN
Glycosyl hydrolase, family 1 {ECO:0000313|EMBL:EDS19490.1}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
ascB; 6-phospho-beta-glucosidase
Displaying 25 items

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