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L2_023_246G1_scaffold_223

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_023_246G1_scaffold_223_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19..645)
DNA (627bp) protein (209aa)
GyrI-like small molecule binding domain protein n=152 Tax=Clostridium difficile RepID=T3GA76_CLODC
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CKG87133.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS94590.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_023_246G1_scaffold_223_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(721..1692)
DNA (972bp) protein (324aa)
nrdF; Ribonucleoside-diphosphate reductase subunitbeta (Ribonucleotide reductase small subunit) (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase subunit beta {ECO:0000256|PIRNR:PIRNR000355}; EC=1.17.4.1 {ECO:0000256|PIRNR:PIRNR000355};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Ribonucleoside-diphosphate reductase subunit beta n=174 Tax=Clostridium difficile RepID=T3G8J9_CLODC
L2_023_246G1_scaffold_223_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1705..3804)
DNA (2100bp) protein (700aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
nrdE; Ribonucleoside-diphosphate reductase subunitalpha (Ribonucleotide reductase large subunit) (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase n=30 Tax=Clostridium difficile RepID=T2VMK0_CLODI
L2_023_246G1_scaffold_223_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4282..5007
DNA (726bp) protein (242aa)
Pentapeptide repeats family protein n=7 Tax=Clostridium difficile RepID=T2VLD9_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CDS94580.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
conserved hypothetical protein
L2_023_246G1_scaffold_223_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5135..6331)
DNA (1197bp) protein (399aa)
ABC-type transport system, iron-family ATP-binding protein {ECO:0000313|EMBL:CDS94576.1}; EC=3.6.3.- {ECO:0000313|EMBL:CDS94576.1};; Putative iron ABC transporter, ATP-binding protein {ECO:0000313|EMBL:CDS89381.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ABC transporter family protein n=6 Tax=Clostridium difficile RepID=T2VJJ4_CLODI
iron ABC transporter ATP-binding protein
L2_023_246G1_scaffold_223_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6334..7359)
DNA (1026bp) protein (342aa)
FecCD transport family protein n=7 Tax=Clostridium difficile RepID=T3HFA7_CLODI
ABC-type transport system, iron-family permease {ECO:0000313|EMBL:CDS88777.1}; Iron chelate uptake ABC transporter, FeCT family, permease protein {ECO:0000313|EMBL:CDS89383.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ABC-type transport system, iron-family permease
L2_023_246G1_scaffold_223_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7431..8561)
DNA (1131bp) protein (377aa)
ABC-type transport system, iron-family extracellular solute-binding protein n=157 Tax=Clostridium difficile RepID=Q184J0_CLOD6
iron ABC transporter substrate-binding protein
Periplasmic binding family protein {ECO:0000313|EMBL:EQE60038.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_023_246G1_scaffold_223_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9155..9550)
DNA (396bp) protein (132aa)
Transposase-like protein n=18 Tax=Clostridium difficile RepID=G6BYE9_CLODI
Transposase {ECO:0000313|EMBL:CDS88783.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
transposase IS200-family protein
L2_023_246G1_scaffold_223_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9715..10722)
DNA (1008bp) protein (336aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein n=8 Tax=Clostridium difficile RepID=T2VJ48_CLODI
two component sensor histidine kinase
L2_023_246G1_scaffold_223_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10719..11390)
DNA (672bp) protein (224aa)
Transcriptional regulatory family protein n=18 Tax=Clostridium difficile RepID=T2VLT5_CLODI
Two-component response regulator (YxdK) {ECO:0000313|EMBL:CDS88787.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
DNA-binding response regulator
L2_023_246G1_scaffold_223_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11467..13461)
DNA (1995bp) protein (665aa)
FtsX-like permease family protein n=17 Tax=Clostridium difficile RepID=T2VJ76_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CDS89392.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ABC transporter, permease
L2_023_246G1_scaffold_223_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13451..14218)
DNA (768bp) protein (256aa)
ABC transporter, ATP-binding protein n=16 Tax=Clostridium difficile RepID=G6BYF4_CLODI
ABC transporter (ATP-binding protein) efflux of cationic peptides {ECO:0000313|EMBL:CDS89394.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ABC transporter ATP-binding protein
L2_023_246G1_scaffold_223_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14473..15318)
DNA (846bp) protein (282aa)
FtsX-like permease family protein n=7 Tax=Clostridium difficile RepID=T3HIY3_CLODI
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:CDS89396.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS88793.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ABC transporter, permease
L2_023_246G1_scaffold_223_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15308..15478)
DNA (171bp) protein (57aa)
Uncharacterized protein n=15 Tax=Clostridium difficile RepID=G6BYF7_CLODI
Bacitracin export ATP-binding protein BceA {ECO:0000313|EMBL:CDS88795.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS89398.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
bceA; bacitracin export ATP-binding protein BceA
L2_023_246G1_scaffold_223_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15555..15782)
DNA (228bp) protein (76aa)
Putative sulfate-transporting ATPase n=10 Tax=Clostridium difficile RepID=T2VKZ4_CLODI
Bacitracin export ATP-binding protein BceA {ECO:0000313|EMBL:CDS88797.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS89399.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ABC transporter ATP-binding protein
L2_023_246G1_scaffold_223_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16478..17383)
DNA (906bp) protein (302aa)
Dihydrodipicolinate synthase 1 {ECO:0000313|EMBL:CDS94523.1}; EC=4.3.3.7 {ECO:0000313|EMBL:CDS94523.1};; Dihydrodipicolinate synthetase family protein {ECO:0000313|EMBL:CDS89401.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
dapA1; Dihydrodipicolinate synthase 1 (EC:4.3.3.7)
Dihydrodipicolinate synthetase family protein n=193 Tax=Clostridium difficile RepID=T3G8E9_CLODC
L2_023_246G1_scaffold_223_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17463..18365)
DNA (903bp) protein (301aa)
Fumarylacetoacetate (FAA) hydrolase family protein n=7 Tax=Clostridium difficile RepID=T2VIT0_CLODI
Putative hydrolase/isomerase/hydratase {ECO:0000313|EMBL:CDS89403.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
hydrolase/isomerase/hydratase
L2_023_246G1_scaffold_223_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18415..19575)
DNA (1161bp) protein (387aa)
Carbohydrate hydrolase {ECO:0000313|EMBL:CKG86848.1}; EC=4.2.1.42 {ECO:0000313|EMBL:CKG86848.1};; D-galactate dehydratase/Altronate hydrolase {ECO:0000313|EMBL:CEJ99642.1}; EC=4.2.1.7 {ECO:0000313|EMBL:CEJ99642.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
D-galactarate dehydratase / Altronate hydrolase family protein n=166 Tax=Clostridium difficile RepID=C9XQ22_CLODC
carbohydrate hydrolase
L2_023_246G1_scaffold_223_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19730..20035)
DNA (306bp) protein (102aa)
SAF domain protein n=141 Tax=Clostridium difficile RepID=T3GCK9_CLODC
carbohydrate hydrolase, SAF domain-containing protein
SAF domain protein {ECO:0000313|EMBL:EQE60066.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_023_246G1_scaffold_223_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20133..21107)
DNA (975bp) protein (325aa)
2-keto-3-deoxygluconate permease family protein n=198 Tax=Clostridium difficile RepID=C9XQ24_CLODC
2-keto-3-deoxygluconate permease
2-keto-3-deoxygluconate permease 2 {ECO:0000313|EMBL:CCL31255.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_023_246G1_scaffold_223_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21689..22465
DNA (777bp) protein (259aa)
Bacterial transcriptional regulator family protein n=193 Tax=Clostridium difficile RepID=C9XQ25_CLODC
IclR family transcriptional regulator
Bacterial transcriptional regulator family protein {ECO:0000313|EMBL:EQE60048.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_023_246G1_scaffold_223_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22798..23943
DNA (1146bp) protein (382aa)
Alcohol dehydrogenase (EC:1.1.1.1)
Alcohol dehydrogenase {ECO:0000313|EMBL:CEJ99646.1}; EC=1.1.1.1 {ECO:0000313|EMBL:CEJ99646.1};; Alcohol dehydrogenase 2 {ECO:0000313|EMBL:CDS89413.1}; EC=1.1.1.1 {ECO:0000313|EMBL:CDS89413.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Iron-containing alcohol dehydrogenase family protein n=108 Tax=Clostridium difficile RepID=T3G796_CLODC
L2_023_246G1_scaffold_223_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24098..24949)
DNA (852bp) protein (284aa)
Bacterial SH3 domain protein n=88 Tax=Clostridium difficile RepID=T3GBH3_CLODC
uncharacterised protein with SH3 domain
Putative L,D-transpeptidases {ECO:0000313|EMBL:CDS94495.1}; SH3 domain protein {ECO:0000313|EMBL:CDS89415.1}; SH3 type 3 domain-containing protein {ECO:0000313|EMBL:CKG86691.1}; Uncharacterised protein with SH3 domain {ECO:0000313|EMBL:CEJ99647.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_023_246G1_scaffold_223_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25085..25507)
DNA (423bp) protein (141aa)
Uncharacterized protein n=74 Tax=Clostridium difficile RepID=G6BYG7_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCL23385.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
hypothetical protein
L2_023_246G1_scaffold_223_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26169..27557)
DNA (1389bp) protein (463aa)
Pyridine nucleotide-disulfide oxidoreductase family protein n=90 Tax=Clostridium difficile RepID=T2UYZ6_CLODI
Putative pyridine nucleotide-disulphide oxidoreductase, class I {ECO:0000313|EMBL:CCL23386.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
pyridine nucleotide-disulfide oxidoreductase
L2_023_246G1_scaffold_223_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27678..28955)
DNA (1278bp) protein (426aa)
Thioredoxin family protein n=70 Tax=Clostridium difficile RepID=T3G9W9_CLODC
cytochrome C assembly protein
Cytochrome c-type biogenesis protein {ECO:0000313|EMBL:CKG86569.1}; Putative cytochrome C assembly protein {ECO:0000313|EMBL:CDS94477.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_023_246G1_scaffold_223_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29092..29427)
DNA (336bp) protein (112aa)
HxlR-like helix-turn-helix family protein n=196 Tax=Clostridium difficile RepID=C9XQ31_CLODC
transcriptional regulator
HxlR-like helix-turn-helix family protein {ECO:0000313|EMBL:EQE60062.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_023_246G1_scaffold_223_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29896..32496)
DNA (2601bp) protein (867aa)
Glycosyl hydrolase family 38 protein {ECO:0000313|EMBL:CDS89424.1}; Putative alpha-mannosidase {ECO:0000313|EMBL:CDS88812.1}; EC=3.2.1.24 {ECO:0000313|EMBL:CDS88812.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
putative alpha-mannosidase (EC:3.2.1.24)
Alpha mannosidase, middle domain protein n=7 Tax=Clostridium difficile RepID=T2VKT7_CLODI
L2_023_246G1_scaffold_223_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32616..33716)
DNA (1101bp) protein (367aa)
PTS system, IIc component n=203 Tax=Clostridium difficile RepID=C9XQ33_CLODC
PTS system, IIc component
PTS system, Fru family, IIC component domain protein {ECO:0000313|EMBL:EQG74298.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_023_246G1_scaffold_223_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33732..34052)
DNA (321bp) protein (107aa)
PTS system, mannose-specfic IIB component {ECO:0000313|EMBL:CCK95503.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CCK95503.1};; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
PTS system, Fru family, IIB component domain protein n=208 Tax=Clostridium difficile RepID=C9XQ34_CLODC
PTS system transporter subunit IIB
Displaying items 1-30 of 58 in total

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