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L2_023_246G1_scaffold_259

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_023_246G1_scaffold_259_1
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..1222
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PGF9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22670.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_023_246G1_scaffold_259_2
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1235..3463
DNA (2229bp) protein (743aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FN70_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82517.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_023_246G1_scaffold_259_3
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3469..4347
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QL29_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22672.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ABC-type multidrug transport system, ATPase component
L2_023_246G1_scaffold_259_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4509..5897
DNA (1389bp) protein (463aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PPD6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22679.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
2-isopropylmalate synthase
L2_023_246G1_scaffold_259_5
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5910..6563
DNA (654bp) protein (218aa)
FCD domain protein n=2 Tax=Clostridium RepID=B6FN79_9CLOT
FCD domain protein {ECO:0000313|EMBL:EEA82526.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
transcriptional regulator, GntR family
L2_023_246G1_scaffold_259_6
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6582..7778
DNA (1197bp) protein (399aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}; EC=1.1.1.42 {ECO:0000256|PIRNR:PIRNR000108};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
isocitrate dehydrogenase, NADP-dependent, eukaryotic type (EC:1.1.1.42)
Isocitrate dehydrogenase [NADP] n=2 Tax=Clostridium RepID=B6FN80_9CLOT
L2_023_246G1_scaffold_259_7
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7878..9800)
DNA (1923bp) protein (641aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FN81_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEA82528.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ATPase components of ABC transporters with duplicated ATPase domains
L2_023_246G1_scaffold_259_8
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9944..10594
DNA (651bp) protein (217aa)
Redox-sensing transcriptional repressor Rex n=2 Tax=Clostridium RepID=B6FN82_9CLOT
Redox-sensing transcriptional repressor Rex {ECO:0000256|HAMAP-Rule:MF_01131}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
CoA-binding protein
L2_023_246G1_scaffold_259_9
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10699..12183
DNA (1485bp) protein (495aa)
YjeF domain protein n=2 Tax=Clostridium RepID=B6FN83_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22684.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region
L2_023_246G1_scaffold_259_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12201..13367
DNA (1167bp) protein (389aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
alanine racemase (EC:5.1.1.1)
Alanine racemase n=2 Tax=Clostridium RepID=B6FN84_9CLOT
L2_023_246G1_scaffold_259_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13451..13798
DNA (348bp) protein (116aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
mRNA interferase n=2 Tax=Clostridium RepID=B6FN85_9CLOT
Growth inhibitor
L2_023_246G1_scaffold_259_12
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13817..14665
DNA (849bp) protein (283aa)
CBS domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FN86_9CLOT
CBS domain protein {ECO:0000313|EMBL:EEA82533.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_023_246G1_scaffold_259_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14705..15436
DNA (732bp) protein (244aa)
Probable transcriptional regulatory protein CLONEX_01595 n=2 Tax=Clostridium RepID=B6FN87_9CLOT
Probable transcriptional regulatory protein BN618_00482 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
conserved hypothetical protein TIGR01033
L2_023_246G1_scaffold_259_14
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15465..16748
DNA (1284bp) protein (428aa)
O-acetylhomoserine sulfhydrolase (EC:2.5.1.49)
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FN88_9CLOT
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase {ECO:0000313|EMBL:EEA82535.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_023_246G1_scaffold_259_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16867..17541
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PGH5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22690.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Protease subunit of ATP-dependent Clp proteases
L2_023_246G1_scaffold_259_16
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17606..20080
DNA (2475bp) protein (825aa)
FtsK/SpoIIIE family protein n=2 Tax=Clostridium RepID=B6FN90_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22691.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
DNA translocase FtsK
L2_023_246G1_scaffold_259_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20099..21769
DNA (1671bp) protein (557aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Formate-tetrahydrofolate ligase (EC:6.3.4.3)
Formate--tetrahydrofolate ligase n=2 Tax=Clostridium RepID=B6FN91_9CLOT
L2_023_246G1_scaffold_259_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21781..22620
DNA (840bp) protein (280aa)
Bifunctional protein FolD n=2 Tax=Clostridium RepID=B6FN92_9CLOT
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
methylenetetrahydrofolate dehydrogenase
L2_023_246G1_scaffold_259_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22746..23927
DNA (1182bp) protein (394aa)
NADPH-dependent butanol dehydrogenase {ECO:0000313|EMBL:EEA82540.1}; EC=1.1.1.1 {ECO:0000313|EMBL:EEA82540.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
NADPH-dependent butanol dehydrogenase n=2 Tax=Clostridium RepID=B6FN93_9CLOT
Alcohol dehydrogenase, class IV
L2_023_246G1_scaffold_259_20
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24082..24972
DNA (891bp) protein (297aa)
sulfide dehydrogenase (flavoprotein) subunit SudB (EC:1.97.-.- 1.18.1.2)
Ferredoxin--NADP+ reductase, subunit alpha n=2 Tax=Clostridium RepID=B6FN95_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22695.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_023_246G1_scaffold_259_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24972..26360
DNA (1389bp) protein (463aa)
glutamate synthase (NADPH), homotetrameric (EC:1.4.1.13 1.4.1.14)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PW51_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22696.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_023_246G1_scaffold_259_22
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26467..27216
DNA (750bp) protein (250aa)
Metal cation transporter, ZIP family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FN97_9CLOT
Metal cation transporter, ZIP family {ECO:0000313|EMBL:EEA82495.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
zinc/iron permease
L2_023_246G1_scaffold_259_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27229..27708
DNA (480bp) protein (160aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Ribosomal RNA large subunit methyltransferase H n=2 Tax=Clostridium RepID=B6FNA0_9CLOT
conserved hypothetical protein TIGR00246
L2_023_246G1_scaffold_259_24
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27725..28582
DNA (858bp) protein (286aa)
EDD domain protein, DegV family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNA1_9CLOT
EDD domain protein, DegV family {ECO:0000313|EMBL:EEA82469.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
EDD domain protein, DegV family
L2_023_246G1_scaffold_259_25
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28566..29042
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNA2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82470.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
putative NADH-ubiquinone oxidoreductase
L2_023_246G1_scaffold_259_26
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29099..29875
DNA (777bp) protein (259aa)
Methyltransferase domain protein n=2 Tax=Clostridium RepID=B6FNA4_9CLOT
Methyltransferase domain protein {ECO:0000313|EMBL:EEA82472.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
SAM-dependent methyltransferase
L2_023_246G1_scaffold_259_27
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29937..30800
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PPG7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22704.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_023_246G1_scaffold_259_28
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30817..31503
DNA (687bp) protein (229aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FNA6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22705.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_023_246G1_scaffold_259_29
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31500..32204
DNA (705bp) protein (235aa)
Exonuclease, DNA polymerase III, epsilon subunit family {ECO:0000313|EMBL:EEA82475.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EEA82475.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
exonuclease, DNA polymerase III, epsilon subunit family (EC:2.7.7.7)
Exonuclease, DNA polymerase III, epsilon subunit family n=2 Tax=Clostridium RepID=B6FNA7_9CLOT
L2_023_246G1_scaffold_259_30
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32321..34651
DNA (2331bp) protein (777aa)
ATPase, P-type (Transporting), HAD superfamily, subfamily IC n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T4Y7_ROSHA
P-type HAD superfamily ATPase
ATPase, P-type (Transporting), HAD superfamily, subfamily IC {ECO:0000313|EMBL:AEN98426.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
Displaying items 1-30 of 56 in total

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