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L2_023_246G1_scaffold_271

Search features with annotation key words

Displaying items 1-30 of 86 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_023_246G1_scaffold_271_1
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(97..723)
DNA (627bp) protein (209aa)
HAD hydrolase family IA variant 1 n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U5W9_9FIRM
HAD hydrolase family IA variant 1 {ECO:0000313|EMBL:CCZ66511.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
HAD-superfamily hydrolase
L2_023_246G1_scaffold_271_2
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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913..1206
DNA (294bp) protein (98aa)
Acetyltransferase, GNAT family n=3 Tax=Lachnospiraceae RepID=A7B2T0_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20295.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
sortase
L2_023_246G1_scaffold_271_3
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1361..3010
DNA (1650bp) protein (550aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TLE9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66513.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
DNA mismatch repair protein MutS domain-containing protein
L2_023_246G1_scaffold_271_4
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3171..4574
DNA (1404bp) protein (468aa)
Uncharacterized protein n=2 Tax=Ruminococcus gnavus RepID=V8C0M1_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20291.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Permeases
L2_023_246G1_scaffold_271_5
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4631..4984)
DNA (354bp) protein (118aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5TLH8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN48387.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L2_023_246G1_scaffold_271_6
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4986..5342)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B2T7_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN77710.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Coenzyme PQQ synthesis protein D (PqqD).
L2_023_246G1_scaffold_271_7
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5439..7334)
DNA (1896bp) protein (632aa)
Oligopeptide transporter, OPT family n=2 Tax=Clostridiales RepID=A7B2T8_RUMGN
Oligopeptide transporter OPT family {ECO:0000313|EMBL:CCZ66517.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L2_023_246G1_scaffold_271_8
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7491..8942)
DNA (1452bp) protein (484aa)
pepD; Xaa-His dipeptidase (EC:3.4.13.3)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BZP0_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20287.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L2_023_246G1_scaffold_271_9
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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9025..9420
DNA (396bp) protein (132aa)
Sporulation protein YqfC n=2 Tax=Lachnospiraceae RepID=A7B2U1_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN48391.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
sporulation protein YqfC
L2_023_246G1_scaffold_271_10
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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9432..10673
DNA (1242bp) protein (414aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=R5TLI3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN48392.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Putative stage IV sporulation protein YqfD.
L2_023_246G1_scaffold_271_11
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10648..11643
DNA (996bp) protein (332aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=R5U5X9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66521.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Phosphate starvation-inducible protein PhoH, predicted ATPase
L2_023_246G1_scaffold_271_12
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11640..12137
DNA (498bp) protein (166aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Endoribonuclease YbeY n=4 Tax=Clostridiales RepID=A7B2U4_RUMGN
conserved hypothetical protein TIGR00043
L2_023_246G1_scaffold_271_13
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12150..13874
DNA (1725bp) protein (575aa)
Polysaccharide biosynthesis protein n=4 Tax=Clostridiales RepID=A7B2U5_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20282.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Membrane protein involved in the export of O-antigen and teichoic acid
L2_023_246G1_scaffold_271_14
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13945..14301
DNA (357bp) protein (119aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5TTE3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN48396.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L2_023_246G1_scaffold_271_15
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14355..14594
DNA (240bp) protein (80aa)
UPF0291 protein RUMGNA_01875 n=4 Tax=Clostridiales RepID=A7B2U7_RUMGN
UPF0291 protein HMPREF1201_00277 {ECO:0000256|HAMAP-Rule:MF_01103}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hypothetical protein
L2_023_246G1_scaffold_271_16
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14572..15141
DNA (570bp) protein (190aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
5,10-methenyltetrahydrofolate synthetase (EC:6.3.3.2)
5-formyltetrahydrofolate cyclo-ligase n=3 Tax=Lachnospiraceae RepID=F7JVS8_9FIRM
L2_023_246G1_scaffold_271_17
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15135..15317
DNA (183bp) protein (61aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=A7B2U9_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:CCZ66526.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L2_023_246G1_scaffold_271_18
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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15527..17011
DNA (1485bp) protein (495aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TTG7_9FIRM
tRNA-i(6)A37 thiotransferase enzyme MiaB
L2_023_246G1_scaffold_271_19
unknown

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17249..17539
DNA (291bp) protein (97aa)

This feature has no annotations

L2_023_246G1_scaffold_271_20
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17594..20245
DNA (2652bp) protein (884aa)
DNA mismatch repair protein MutS n=2 Tax=Lachnospiraceae RepID=F7JVT5_9FIRM
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
DNA mismatch repair protein MutS
L2_023_246G1_scaffold_271_21
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20265..22259
DNA (1995bp) protein (665aa)
DNA mismatch repair protein MutL n=3 Tax=Clostridiales RepID=F7JVT6_9FIRM
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
DNA mismatch repair protein MutL
L2_023_246G1_scaffold_271_22
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22260..23228
DNA (969bp) protein (323aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
tRNA isopentenyltransferase (miaA) (EC:2.5.1.75)
tRNA dimethylallyltransferase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TLI4_9FIRM
L2_023_246G1_scaffold_271_23
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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23225..24526
DNA (1302bp) protein (434aa)
Aluminum resistance protein n=3 Tax=Lachnospiraceae RepID=A7B2V9_RUMGN
Aluminum resistance protein {ECO:0000313|EMBL:EDN77732.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Cystathionine beta-lyase family protein involved in aluminum resistance
L2_023_246G1_scaffold_271_24
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24544..25770
DNA (1227bp) protein (409aa)
Flavoprotein family protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TLL6_9FIRM
Flavoprotein family protein {ECO:0000313|EMBL:CCZ66565.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
conserved hypothetical protein TIGR00275
L2_023_246G1_scaffold_271_25
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25757..27349
DNA (1593bp) protein (531aa)
FAD dependent oxidoreductase n=4 Tax=Clostridiales RepID=A7B2W1_RUMGN
FAD dependent oxidoreductase {ECO:0000313|EMBL:EDN77734.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Uncharacterized FAD-dependent dehydrogenases
L2_023_246G1_scaffold_271_26
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27442..28188
DNA (747bp) protein (249aa)
DNA repair protein RadC n=3 Tax=Lachnospiraceae RepID=A7B2W2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20266.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
DNA replication and repair protein RadC
L2_023_246G1_scaffold_271_27
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28185..29117
DNA (933bp) protein (311aa)
Cell shape determining protein MreB/Mrl family n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TLI9_9FIRM
Cell shape determining protein MreB/Mrl family {ECO:0000313|EMBL:CCZ66568.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Actin-like ATPase involved in cell morphogenesis
L2_023_246G1_scaffold_271_28
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29119..29988
DNA (870bp) protein (290aa)
Cell shape-determining protein MreC n=3 Tax=Lachnospiraceae RepID=A7B2W4_RUMGN
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
rod shape-determining protein MreC
L2_023_246G1_scaffold_271_29
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30007..30540
DNA (534bp) protein (178aa)
Rod shape-determining protein MreD n=4 Tax=Clostridiales RepID=A7B2W5_RUMGN
Rod shape-determining protein MreD {ECO:0000313|EMBL:EGN48414.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
rod shape-determining protein MreD
L2_023_246G1_scaffold_271_30
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30533..33388
DNA (2856bp) protein (952aa)
Penicillin-binding protein, transpeptidase domain protein n=3 Tax=Lachnospiraceae RepID=A7B2W6_RUMGN
Penicillin-binding protein, transpeptidase domain protein {ECO:0000313|EMBL:EDN77739.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
pbpA1; penicillin-binding protein PbpA1
Displaying items 1-30 of 86 in total

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