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L2_023_246G1_scaffold_319

Search features with annotation key words

Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_023_246G1_scaffold_319_1
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..792)
DNA (792bp) protein (264aa)
CobQ/CobB/MinD/ParA nucleotide binding domain protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7AZR6_RUMGN
CobQ/CobB/MinD/ParA nucleotide binding domain protein {ECO:0000313|EMBL:EDN78928.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
ATPases involved in chromosome partitioning
L2_023_246G1_scaffold_319_2
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1270..1677)
DNA (408bp) protein (136aa)
30S ribosomal protein S9 n=2 Tax=Clostridium RepID=B6FLX4_9CLOT
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
30S ribosomal protein S9
L2_023_246G1_scaffold_319_3
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1704..2132)
DNA (429bp) protein (143aa)
50S ribosomal protein L13 n=2 Tax=Clostridium RepID=B6FLX3_9CLOT
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
LSU ribosomal protein L13P
L2_023_246G1_scaffold_319_4
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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2375..3682
DNA (1308bp) protein (436aa)
Alpha amylase, catalytic domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FLW7_9CLOT
Alpha amylase, catalytic domain protein {ECO:0000313|EMBL:EEA82957.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Glycosidases
L2_023_246G1_scaffold_319_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3835..4353)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QKR3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22522.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_023_246G1_scaffold_319_6
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4383..4889)
DNA (507bp) protein (169aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FLV7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82984.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_023_246G1_scaffold_319_7
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4953..6176)
DNA (1224bp) protein (408aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=2 Tax=Clostridium RepID=B6FLV6_9CLOT
L2_023_246G1_scaffold_319_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6547..9129)
DNA (2583bp) protein (861aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QKS2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22532.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_023_246G1_scaffold_319_9
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9110..10066)
DNA (957bp) protein (319aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EDS04876.1}; EC=2.4.-.- {ECO:0000313|EMBL:EDS04876.1};; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
Glycosyltransferase, group 2 family protein n=2 Tax=Clostridiales RepID=B0NKH2_CLOSV
Glycosyltransferases involved in cell wall biogenesis
L2_023_246G1_scaffold_319_10
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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10205..10906
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RLM1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC43931.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
yrkP; putative transcriptional regulatory protein YrkP
L2_023_246G1_scaffold_319_11
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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10899..12260
DNA (1362bp) protein (454aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9MSK9_9FIRM
signal transduction histidine kinase
L2_023_246G1_scaffold_319_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12320..13444)
DNA (1125bp) protein (375aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
N-acetylglucosamine-6-phosphate deacetylase (EC:3.5.1.25)
N-acetylglucosamine-6-phosphate deacetylase n=2 Tax=Clostridium RepID=R6PIB9_9CLOT
L2_023_246G1_scaffold_319_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13480..14211)
DNA (732bp) protein (244aa)
Glucosamine-6-phosphate deaminase {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029492}; EC=3.5.99.6 {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029496};; GlcN6P deaminase {ECO:0000256|HAMAP-Rule:MF_01241}; Glucosamine-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01241}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Glucosamine-6-phosphate deaminase n=2 Tax=Clostridium RepID=B6FLH2_9CLOT
glucosamine-6-phosphate isomerase
L2_023_246G1_scaffold_319_14
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14362..16533)
DNA (2172bp) protein (724aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JKQ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31032.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
methyl-accepting chemotaxis sensory transducer
L2_023_246G1_scaffold_319_15
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16560..18323)
DNA (1764bp) protein (588aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JK07_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31033.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
Methyl-accepting chemotaxis protein
L2_023_246G1_scaffold_319_16
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18301..19497)
DNA (1197bp) protein (399aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2AAB4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ21274.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
hypothetical protein
L2_023_246G1_scaffold_319_17
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19531..20283)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9MU78_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS74650.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
ftsE; cell division ATP-binding protein FtsE
L2_023_246G1_scaffold_319_18
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20407..21141
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9MU67_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS74649.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
hypothetical protein
L2_023_246G1_scaffold_319_19
unknown

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21209..21412
DNA (204bp) protein (68aa)

This feature has no annotations

L2_023_246G1_scaffold_319_20
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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21360..21716
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LXQ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS63293.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
Response regulator
L2_023_246G1_scaffold_319_21
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21768..22169)
DNA (402bp) protein (134aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JK09_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31037.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
hypothetical protein
L2_023_246G1_scaffold_319_22
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22186..22557)
DNA (372bp) protein (124aa)
Flagellar protein FliS n=1 Tax=Dorea sp. 5-2 RepID=R9N3L1_9FIRM
Flagellar protein FliS {ECO:0000313|EMBL:EOS74647.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
flagellar protein FliS
L2_023_246G1_scaffold_319_23
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22580..25024)
DNA (2445bp) protein (815aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JK10_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31039.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
Flagellar capping protein
L2_023_246G1_scaffold_319_24
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25167..25952
DNA (786bp) protein (262aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JK11_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31040.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
ParA family protein
L2_023_246G1_scaffold_319_25
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25955..26662
DNA (708bp) protein (236aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JK12_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31041.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
late competence development protein ComFB
L2_023_246G1_scaffold_319_26
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26677..27300)
DNA (624bp) protein (208aa)
PAS domain S-box protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KFT2_9FIRM
PAS domain S-box protein {ECO:0000313|EMBL:EGN34637.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
Signal transduction histidine kinase
L2_023_246G1_scaffold_319_27
Anaerofustis stercorihominis, Anaerofustis, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27476..27817)
DNA (342bp) protein (114aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=445971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Anaerofustis.;" source="Anaerofustis stercorihominis DSM 17244.;"
PTS system, lactose/cellobiose family IIC component n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C6W1_9FIRM
hypothetical protein
L2_023_246G1_scaffold_319_28
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28488..29753)
DNA (1266bp) protein (422aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2A044_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ21496.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
diguanylate phosphodiesterase
L2_023_246G1_scaffold_319_29
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29755..30669)
DNA (915bp) protein (305aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JK14_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN31043.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
response regulator receiver modulated CheW protein
L2_023_246G1_scaffold_319_30
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30737..31216)
DNA (480bp) protein (160aa)
Probable chemoreceptor glutamine deamidase CheD {ECO:0000256|HAMAP-Rule:MF_01440}; EC=3.5.1.44 {ECO:0000256|HAMAP-Rule:MF_01440};; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
Chemotaxis protein; stimulates methylation of MCP proteins (EC:3.5.1.44)
Probable chemoreceptor glutamine deamidase CheD n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JK15_9FIRM
Displaying items 1-30 of 62 in total

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