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L2_023_246G1_scaffold_329

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_023_246G1_scaffold_329_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..344
DNA (342bp) protein (114aa)
HAD hydrolase, IIB family protein n=7 Tax=Clostridium difficile RepID=T2UMB6_CLODI
hydrolase
Cof-like hydrolase {ECO:0000313|EMBL:EHJ33182.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_023_246G1_scaffold_329_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(467..937)
DNA (471bp) protein (157aa)
Uncharacterized protein n=205 Tax=Clostridium difficile RepID=T2TAN8_CLODI
lipoprotein
Uncharacterized protein {ECO:0000313|EMBL:EQE60286.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_023_246G1_scaffold_329_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1076..1720
DNA (645bp) protein (215aa)
Putative undecaprenyl pyrophosphate synthetase {ECO:0000313|EMBL:CCK99255.1}; EC=2.5.1.31 {ECO:0000313|EMBL:CCK99255.1};; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
Undecaprenyl pyrophosphate synthetase n=205 Tax=Clostridium difficile RepID=C9XP66_CLODC
UDP pyrophosphate synthetase
L2_023_246G1_scaffold_329_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1844..2668
DNA (825bp) protein (275aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
N-acetylmuramoyl-L-alanine amidase family protein n=118 Tax=Clostridium difficile RepID=T3GBZ1_CLODC
N-acetylmuramoyl-L-alanine amidase family protein {ECO:0000313|EMBL:EQE60314.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_023_246G1_scaffold_329_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2983..4530
DNA (1548bp) protein (516aa)
Diguanylate cyclase domain protein n=7 Tax=Clostridium difficile RepID=T2VM97_CLODI
Cyclic diguanylate phosphodiesterase domain protein {ECO:0000313|EMBL:CDS89070.1}; Putative signaling protein {ECO:0000313|EMBL:CDS95746.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
putative signaling protein
L2_023_246G1_scaffold_329_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4533..4931
DNA (399bp) protein (133aa)
Transcriptional regulator family protein n=207 Tax=Clostridium difficile RepID=C9XP63_CLODC
hypothetical protein
Transcriptional regulator, Rrf2 family {ECO:0000313|EMBL:CCL31030.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_023_246G1_scaffold_329_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4971..6704
DNA (1734bp) protein (578aa)
putative N6 adenine-specific DNAmethyltransferase, N12 class (EC:2.1.1.72)
Eco57I restriction endonuclease n=155 Tax=Clostridium difficile RepID=G6BF72_CLODI
Eco57I restriction-modification methylase family protein {ECO:0000313|EMBL:EQG74156.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_023_246G1_scaffold_329_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6936..8147
DNA (1212bp) protein (404aa)
Phospholipase, patatin family n=47 Tax=Clostridium difficile RepID=G6BTJ1_CLODI
phospholipase
Phospholipase, patatin family {ECO:0000313|EMBL:CDS89065.1}; Putative acyl transferase/phospholipase {ECO:0000313|EMBL:CDS95763.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_023_246G1_scaffold_329_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8340..8600
DNA (261bp) protein (87aa)
Histidine-containing phosphocarrier protein of the phosphotransferase system (PTS) (HPr protein) {ECO:0000313|EMBL:CDS89062.1}; PTS system%2C phosphocarrier protein {ECO:0000313|EMBL:CKH86143.1}; EC=2.7.11.- {ECO:0000313|EMBL:CKH86143.1};; PTS system, HPr protein {ECO:0000313|EMBL:CEJ99384.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
PTS system, phosphocarrier protein n=220 Tax=Clostridium difficile RepID=C9XP60_CLODC
ptsH; PTS system, phosphocarrier protein
L2_023_246G1_scaffold_329_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8954..10666
DNA (1713bp) protein (571aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
ptsI; phosphoenolpyruvate-protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase n=122 Tax=Clostridium difficile RepID=T3GAH1_CLODC
L2_023_246G1_scaffold_329_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11458..12123)
DNA (666bp) protein (222aa)
Uncharacterized protein n=136 Tax=Clostridium difficile RepID=C9XP58_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL23116.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L2_023_246G1_scaffold_329_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12467..13897
DNA (1431bp) protein (477aa)
Uncharacterized protein n=7 Tax=Clostridium difficile RepID=T2VLC2_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CDS89056.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
hypothetical protein
L2_023_246G1_scaffold_329_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14265..14843
DNA (579bp) protein (193aa)
Accessory gene regulator n=168 Tax=Clostridium difficile RepID=Q183I4_CLOD6
agrB; accessory gene regulator
Accessory transciptional regulator B family protein {ECO:0000313|EMBL:EQE60333.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_023_246G1_scaffold_329_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14873..15019
DNA (147bp) protein (49aa)
Autoinducer prepeptide n=77 Tax=Clostridium difficile RepID=C9XNC1_CLODC
autoinducer prepeptide
Autoinducer prepeptide {ECO:0000313|EMBL:CCL31021.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_023_246G1_scaffold_329_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15324..16703
DNA (1380bp) protein (460aa)
Six-Cys-in-45 modification radical SAM protein n=136 Tax=Clostridium difficile RepID=G6B4H5_CLODI
radical SAM protein
Putative radical SAM-family protein {ECO:0000313|EMBL:CCL31020.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_023_246G1_scaffold_329_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16732..17229
DNA (498bp) protein (166aa)
Bacterial transferase hexapeptide family protein n=197 Tax=Clostridium difficile RepID=C9XNB9_CLODC
transferase
Bacterial transferase hexapeptide family protein {ECO:0000313|EMBL:EQE60353.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_023_246G1_scaffold_329_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17527..19191
DNA (1665bp) protein (555aa)
ABC1 family protein n=155 Tax=Clostridium difficile RepID=C9XNB8_CLODC
Putative ubiquinone biosynthesis protein {ECO:0000313|EMBL:CEJ99374.1}; Ubiquinone biosynthesis protein {ECO:0000313|EMBL:CKH85872.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ubiquinone biosynthesis protein
L2_023_246G1_scaffold_329_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19204..21654
DNA (2451bp) protein (817aa)
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:EQG74135.1}; EC=3.1.-.- {ECO:0000313|EMBL:EQG74135.1};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Single-stranded-DNA-specific exonuclease RecJ n=75 Tax=Clostridium difficile RepID=G6BTK2_CLODI
recJ; single-stranded-DNA-specific exonuclease
L2_023_246G1_scaffold_329_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21667..22179
DNA (513bp) protein (171aa)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Adenine phosphoribosyltransferase n=212 Tax=Clostridium difficile RepID=APT_CLOD6
apt; adenine phosphoribosyltransferase
L2_023_246G1_scaffold_329_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22253..24460
DNA (2208bp) protein (736aa)
GTP pyrophosphokinase (RelA/SpoT) {ECO:0000313|EMBL:CCK99237.1}; EC=2.7.6.5 {ECO:0000313|EMBL:CCK99237.1};; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
GTP pyrophosphokinase (RelA/SpoT) n=201 Tax=Clostridium difficile RepID=Q183H8_CLOD6
GTP pyrophosphokinase
L2_023_246G1_scaffold_329_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24485..24934
DNA (450bp) protein (150aa)
dtd; D-tyrosyl-tRNA(Tyr) deacylase (EC:3.1.-.-)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160054}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518};; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
D-tyrosyl-tRNA(Tyr) deacylase n=190 Tax=Clostridium difficile RepID=DTD_CLOD6
L2_023_246G1_scaffold_329_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24949..25563
DNA (615bp) protein (205aa)
Metallo-beta-lactamase superfamily protein n=7 Tax=Clostridium difficile RepID=T2VL45_CLODI
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:CDS89036.1}; Putative hydrolase beta-lactamase-like {ECO:0000313|EMBL:CDS95887.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
hydrolase beta-lactamase-like
L2_023_246G1_scaffold_329_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25654..27210
DNA (1557bp) protein (519aa)
Coproporphyrinogen III oxidase {ECO:0000313|EMBL:CDS95894.1}; EC=1.3.99.22 {ECO:0000313|EMBL:CDS95894.1};; Oxygen-independent coproporphyrinogen-III oxidase 2 {ECO:0000313|EMBL:CDS89034.1}; EC=1.3.99.22 {ECO:0000313|EMBL:CDS89034.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
hemZ; Coproporphyrinogen III oxidase (EC:1.3.99.22)
Coproporphyrinogen dehydrogenase HemZ n=48 Tax=Clostridium difficile RepID=T2TE86_CLODI
L2_023_246G1_scaffold_329_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


27200..28462
DNA (1263bp) protein (421aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Histidine--tRNA ligase n=7 Tax=Clostridium difficile RepID=T2VMT7_CLODI
hisS; histidyl-tRNA synthetase
L2_023_246G1_scaffold_329_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


28536..30323
DNA (1788bp) protein (596aa)
Aspartate--tRNA ligase {ECO:0000313|EMBL:EQE60383.1}; EC=6.1.1.- {ECO:0000313|EMBL:EQE60383.1};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
aspS; Aspartyl-tRNA synthetase (Aspartate--tRNAligase) (AspRS) (EC:6.1.1.12)
Aspartate--tRNA ligase n=125 Tax=Clostridium difficile RepID=T3GF40_CLODC
L2_023_246G1_scaffold_329_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30782..32014
DNA (1233bp) protein (411aa)
Permease for cytosine/purine, uracil, thiamine, allantoin family protein n=132 Tax=Clostridium difficile RepID=T2UE99_CLODI
cytosine permease
Putative cytosine permease {ECO:0000313|EMBL:CCL31009.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_023_246G1_scaffold_329_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32028..32834
DNA (807bp) protein (269aa)
Carbon-nitrogen hydrolase family protein n=77 Tax=Clostridium difficile RepID=T3GB53_CLODC
putative nitrilase/cyanide hydratase andapolipoprotein N-acyltransferase
Putative nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase {ECO:0000313|EMBL:CAJ69624.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_023_246G1_scaffold_329_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32946..33815)
DNA (870bp) protein (290aa)
Bacterial regulatory helix-turn-helix , lysR family protein n=203 Tax=Clostridium difficile RepID=C9XNA7_CLODC
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CCL31007.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_023_246G1_scaffold_329_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34109..35614
DNA (1506bp) protein (502aa)
Cell wall binding repeat 2 family protein n=29 Tax=Clostridium difficile RepID=T3N1H2_CLODI
cell surface protein
Cell surface protein {ECO:0000313|EMBL:CBE06094.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L2_023_246G1_scaffold_329_30
unknown

Not on your lists

35724..35933
DNA (210bp) protein (70aa)

This feature has no annotations

Displaying items 1-30 of 46 in total

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