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L2_023_246G1_scaffold_338

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_023_246G1_scaffold_338_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..165)
DNA (165bp) protein (55aa)
Permease family protein n=1 Tax=Clostridium difficile P15 RepID=T4KW69_CLODI
xanthine/uracile permease
Putative xanthine/uracil permease {ECO:0000313|EMBL:CCL30307.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_023_246G1_scaffold_338_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(494..1534)
DNA (1041bp) protein (347aa)
AAA domain family protein n=201 Tax=Clostridium difficile RepID=C9XJV7_CLODC
sigma-54-dependent transcriptional regulator
AAA domain family protein {ECO:0000313|EMBL:EQE62934.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_023_246G1_scaffold_338_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1861..3129)
DNA (1269bp) protein (423aa)
McrBC 5-methylcytosine restriction system component family protein n=35 Tax=Clostridium difficile RepID=T2VPG7_CLODI
McrBC 5-methylcytosine restriction system component family protein {ECO:0000313|EMBL:EQH98893.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
conserved hypothetical protein
L2_023_246G1_scaffold_338_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3122..5056)
DNA (1935bp) protein (645aa)
AAA domain family protein n=74 Tax=Clostridium difficile RepID=T3GJX8_CLODC
restriction enzyme
Putative restriction enzyme {ECO:0000313|EMBL:CAJ68979.2}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_023_246G1_scaffold_338_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5085..5807)
DNA (723bp) protein (241aa)
FtsZ family, C-terminal domain protein n=7 Tax=Clostridium difficile RepID=T2VMS7_CLODI
Putative cell division GTPase {ECO:0000313|EMBL:CDT16312.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS88328.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
hypothetical protein
L2_023_246G1_scaffold_338_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5857..6861)
DNA (1005bp) protein (335aa)
DeoR-like helix-turn-helix domain protein n=53 Tax=Clostridium difficile RepID=C9XJW1_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE04987.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L2_023_246G1_scaffold_338_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6900..7400)
DNA (501bp) protein (167aa)
QueT transporter family protein n=199 Tax=Clostridium difficile RepID=T3GNZ4_CLODC
putative membrane protein, DUF988 family
QueT transporter family protein {ECO:0000313|EMBL:EQE62840.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_023_246G1_scaffold_338_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7686..7997)
DNA (312bp) protein (104aa)
Uncharacterized protein n=184 Tax=Clostridium difficile RepID=C9XJW3_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQE62839.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_023_246G1_scaffold_338_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8137..10401)
DNA (2265bp) protein (755aa)
Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding domain protein {ECO:0000313|EMBL:CDS88333.1}; Xanthine dehydrogenase subunit XdhD, molybdopterin-binding {ECO:0000313|EMBL:CDT16254.1}; EC=1.17.1.4 {ECO:0000313|EMBL:CDT16254.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
XdhD; xanthine dehydrogenase subunit XdhD (EC:1.17.1.4)
Molybdopterin-binding domain of aldehyde dehydrogenase family protein n=7 Tax=Clostridium difficile RepID=T2VKH9_CLODI
L2_023_246G1_scaffold_338_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10405..10854)
DNA (450bp) protein (150aa)
2Fe-2S iron-sulfur cluster binding domain protein n=191 Tax=Clostridium difficile RepID=C9XJW5_CLODC
[2Fe-2S]-binding subunit of oxidoreductase
2Fe-2S iron-sulfur cluster binding domain protein {ECO:0000313|EMBL:EQE62846.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_023_246G1_scaffold_338_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10854..11642)
DNA (789bp) protein (263aa)
FAD binding domain in molybdopterin dehydrogenase family protein n=153 Tax=Clostridium difficile RepID=C9XJW6_CLODC
FAD-binding subunit of oxidoreductase
Xanthine dehydrogenase subunit XdhB,FAD-binding {ECO:0000313|EMBL:CCL30317.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_023_246G1_scaffold_338_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11837..13105)
DNA (1269bp) protein (423aa)
Transporter, CPA2 family n=190 Tax=Clostridium difficile RepID=G6BCD6_CLODI
Na(+)/H(+) antiporter
Putative Na(+)/H(+) antiporter {ECO:0000313|EMBL:CCK98488.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L2_023_246G1_scaffold_338_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13446..13607)
DNA (162bp) protein (54aa)
Uncharacterized protein n=192 Tax=Clostridium difficile RepID=F3Y5U5_CLOD6
conserved hypothetical protein
Putative dNA polymerase III {ECO:0000313|EMBL:EQH98903.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L2_023_246G1_scaffold_338_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13756..14838)
DNA (1083bp) protein (361aa)
ABC-type transport system, permease n=113 Tax=Clostridium difficile RepID=Q188H2_CLOD6
ABC transporter permease
ABC-type transport system, permease {ECO:0000313|EMBL:CAJ68988.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_023_246G1_scaffold_338_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14941..16536)
DNA (1596bp) protein (532aa)
Putative membrane protein n=8 Tax=Clostridium difficile RepID=T2VNS4_CLODI
ABC-type transport system, permease {ECO:0000313|EMBL:CDT16182.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS88345.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ABC-type transport system, permease
L2_023_246G1_scaffold_338_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16583..17290)
DNA (708bp) protein (236aa)
ABC transporter, ATP-binding protein n=194 Tax=Clostridium difficile RepID=C9XJX0_CLODC
ABC transporter ATP-binding protein
ABC transporter family protein {ECO:0000313|EMBL:EQE62850.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_023_246G1_scaffold_338_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17543..18688
DNA (1146bp) protein (382aa)
ATP-dependent RNA helicase {ECO:0000313|EMBL:CKH21787.1}; EC=3.6.4.13 {ECO:0000313|EMBL:CKH21787.1};; Putative ATP-dependent RNA helicase {ECO:0000313|EMBL:CDS88348.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Helicase conserved C-terminal domain protein n=63 Tax=Clostridium difficile RepID=T3GJQ2_CLODC
putative ATP-dependent RNA helicase
L2_023_246G1_scaffold_338_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18802..20178)
DNA (1377bp) protein (459aa)
Permease family protein n=175 Tax=Clostridium difficile RepID=T3GIP5_CLODC
Xanthine/uracil/thiamine/ascorbate permeasefamily protein
Permease family protein {ECO:0000313|EMBL:EQE62856.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_023_246G1_scaffold_338_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20624..21970
DNA (1347bp) protein (449aa)
MATE efflux family protein n=17 Tax=Clostridium difficile RepID=T2UQR1_CLODI
Putative drug/sodium antiporter, MATE family {ECO:0000313|EMBL:CCL22399.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
putative drug/sodium antiporter, MATE family
L2_023_246G1_scaffold_338_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22030..23442
DNA (1413bp) protein (471aa)
Citrate transporter family protein n=10 Tax=Clostridium difficile RepID=T3P466_CLODI
sodium:sulfate symporter
Putative sodium:sulfate symporter {ECO:0000313|EMBL:CBE05010.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L2_023_246G1_scaffold_338_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23564..24238)
DNA (675bp) protein (225aa)
Transaldolase {ECO:0000256|SAAS:SAAS00118670}; EC=2.2.1.2 {ECO:0000256|SAAS:SAAS00118670};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
putative transaldolase C-like (EC:2.2.1.2)
Fructose-6-phosphate aldolase n=7 Tax=Clostridium difficile RepID=T2VMZ2_CLODI
L2_023_246G1_scaffold_338_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24512..25276
DNA (765bp) protein (255aa)
Transcriptional regulator, DeoR family n=181 Tax=Clostridium difficile RepID=Q185Q0_CLOD6
DeoR family transcriptional regulator
DeoR-like helix-turn-helix domain protein {ECO:0000313|EMBL:EQH98912.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L2_023_246G1_scaffold_338_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25565..25786)
DNA (222bp) protein (74aa)
Uncharacterized protein n=164 Tax=Clostridium difficile RepID=C9XJX7_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL30330.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_023_246G1_scaffold_338_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26187..27464)
DNA (1278bp) protein (426aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Two-component sensor histidine kinase n=158 Tax=Clostridium difficile RepID=Q185Q2_CLOD6
Two-component sensor histidine kinase
L2_023_246G1_scaffold_338_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27448..28116)
DNA (669bp) protein (223aa)
Response regulator n=220 Tax=Clostridium difficile RepID=C9XJX9_CLODC
two-component system response regulator
Two-component response regulator {ECO:0000313|EMBL:CAJ68999.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_023_246G1_scaffold_338_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28276..30777)
DNA (2502bp) protein (834aa)
Copper transporter ATPase {ECO:0000313|EMBL:CDS88367.1}; Copper-transporting P-type ATPase {ECO:0000313|EMBL:CKH22077.1}; EC=3.6.3.- {ECO:0000313|EMBL:CKH22077.1};; Putative copper-transporting P-type ATPase {ECO:0000313|EMBL:CDT16079.1}; EC=3.6.3.4 {ECO:0000313|EMBL:CDT16079.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
putative copper-transporting P-type ATPase (EC:3.6.3.4)
Copper-translocating P-type ATPase n=70 Tax=Clostridium difficile RepID=T3GNK5_CLODC
L2_023_246G1_scaffold_338_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31061..31252)
DNA (192bp) protein (64aa)
Uncharacterized protein n=221 Tax=Clostridium difficile RepID=T3GJH4_CLODC
uncharacterised protein
Uncharacterized protein {ECO:0000313|EMBL:CCK94561.1}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
L2_023_246G1_scaffold_338_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31400..31642)
DNA (243bp) protein (81aa)
Uncharacterized protein n=30 Tax=Clostridium difficile RepID=D5Q3J7_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCK94562.1}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
conserved hypothetical protein
L2_023_246G1_scaffold_338_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31854..33677
DNA (1824bp) protein (608aa)
GTP-binding protein n=211 Tax=Clostridium difficile RepID=C9XJY1_CLODC
GTP-binding protein TypA {ECO:0000313|EMBL:EHJ25791.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
GTP-binding protein
L2_023_246G1_scaffold_338_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33767..34675)
DNA (909bp) protein (303aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
Thioredoxin reductase n=184 Tax=Clostridium difficile RepID=C9XJY2_CLODC
trxB2; thioredoxin reductase
Displaying items 1-30 of 47 in total

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