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L2_023_246G1_scaffold_353

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_023_246G1_scaffold_353_1
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(486..1361)
DNA (876bp) protein (292aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FQE6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22359.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_023_246G1_scaffold_353_2
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1377..2654)
DNA (1278bp) protein (426aa)
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase n=2 Tax=Clostridium RepID=B6FQE7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22358.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_023_246G1_scaffold_353_3
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2674..3210)
DNA (537bp) protein (179aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FQE8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81776.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_023_246G1_scaffold_353_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3234..4136)
DNA (903bp) protein (301aa)
ParB-like protein n=2 Tax=Clostridium RepID=B6FQE9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22356.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ParB-like partition proteins
L2_023_246G1_scaffold_353_5
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4136..4903)
DNA (768bp) protein (256aa)
CobQ/CobB/MinD/ParA nucleotide binding domain protein n=2 Tax=Clostridium RepID=B6FQF0_9CLOT
CobQ/CobB/MinD/ParA nucleotide binding domain protein {ECO:0000313|EMBL:EEA81778.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ATPases involved in chromosome partitioning
L2_023_246G1_scaffold_353_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5215..6081
DNA (867bp) protein (289aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FQF1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22354.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
alpha/beta fold family hydrolase
L2_023_246G1_scaffold_353_7
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6129..6842)
DNA (714bp) protein (238aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
16S rRNA m(7)G-527 methyltransferase (EC:2.1.1.- 2.1.-.-)
Ribosomal RNA small subunit methyltransferase G n=2 Tax=Clostridium RepID=B6FQF2_9CLOT
L2_023_246G1_scaffold_353_8
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6849..8795)
DNA (1947bp) protein (649aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=2 Tax=Clostridium RepID=B6FQF3_9CLOT
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
glucose-inhibited division protein A
L2_023_246G1_scaffold_353_9
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8761..10134)
DNA (1374bp) protein (458aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
tRNA modification GTPase MnmE n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FQF4_9CLOT
tRNA modification GTPase trmE
L2_023_246G1_scaffold_353_10
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10201..11013)
DNA (813bp) protein (271aa)
R3H domain protein n=2 Tax=Clostridium nexile DSM 1787 RepID=B6FVU0_9CLOT
R3H domain protein {ECO:0000313|EMBL:EEA79851.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted RNA-binding protein
L2_023_246G1_scaffold_353_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11067..12311)
DNA (1245bp) protein (415aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PNB4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22349.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
membrane protein insertase, YidC/Oxa1 family, C-terminal domain
L2_023_246G1_scaffold_353_12
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12552..12902)
DNA (351bp) protein (117aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Ribonuclease P protein component n=2 Tax=Clostridium RepID=B6FQF8_9CLOT
ribonuclease P
L2_023_246G1_scaffold_353_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13642..15027
DNA (1386bp) protein (462aa)
Chromosomal replication initiator protein DnaA n=2 Tax=Clostridium RepID=B6FQG1_9CLOT
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
chromosomal replication initiator protein DnaA
L2_023_246G1_scaffold_353_14
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15299..16408
DNA (1110bp) protein (370aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
DNA polymerase III, beta subunit (EC:2.7.7.7)
DNA polymerase III subunit beta n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FQG2_9CLOT
L2_023_246G1_scaffold_353_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16412..16621
DNA (210bp) protein (70aa)
S4 domain protein n=2 Tax=Clostridium RepID=B6FQG3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22342.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_023_246G1_scaffold_353_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16644..17741
DNA (1098bp) protein (366aa)
DNA replication and repair protein RecF n=2 Tax=Clostridium RepID=B6FQG4_9CLOT
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
recF protein
L2_023_246G1_scaffold_353_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17752..19668
DNA (1917bp) protein (639aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=2 Tax=Clostridium RepID=B6FQG5_9CLOT
L2_023_246G1_scaffold_353_18
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


19686..22130
DNA (2445bp) protein (815aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FQG6_9CLOT
L2_023_246G1_scaffold_353_19
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22142..22627
DNA (486bp) protein (162aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FQG7_9CLOT
Superoxide dismutase [Cu-Zn] {ECO:0000313|EMBL:CDC22338.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Cu/Zn superoxide dismutase
L2_023_246G1_scaffold_353_20
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22689..23129)
DNA (441bp) protein (147aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FQG8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81708.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
redox-active protein
L2_023_246G1_scaffold_353_21
Eubacterium dolichum CAG:375, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23221..23832
DNA (612bp) protein (204aa)
Resolvase, N-terminal domain protein n=2 Tax=Firmicutes RepID=A8RDB6_9FIRM
Resolvase N-terminal domain protein {ECO:0000313|EMBL:CDE21866.1}; TaxID=1263076 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium dolichum CAG:375.;"
hypothetical protein
L2_023_246G1_scaffold_353_22
Eubacterium dolichum CAG:375, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24139..24570
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Eubacterium dolichum CAG:375 RepID=R7G9C8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE23730.1}; TaxID=1263076 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium dolichum CAG:375.;"
rrf2 family protein (putative transcriptional regulator)
L2_023_246G1_scaffold_353_23
unknown

Not on your lists

24780..25070
DNA (291bp) protein (97aa)

This feature has no annotations

L2_023_246G1_scaffold_353_24
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25352..25840
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BC88_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG81856.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
L2_023_246G1_scaffold_353_25
unknown

Not on your lists

comp(25863..26324)
DNA (462bp) protein (154aa)

This feature has no annotations

L2_023_246G1_scaffold_353_26
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26523..27149
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BDD9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG80318.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
hypothetical protein
L2_023_246G1_scaffold_353_27
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27302..28648
DNA (1347bp) protein (449aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PUZ9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22336.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
putative ABC transporter substrate-binding protein
L2_023_246G1_scaffold_353_28
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28730..30271
DNA (1542bp) protein (514aa)
ABC transporter ATP-binding protein n=2 Tax=Clostridium RepID=R6PFG2_9CLOT
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDC22335.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
putative ABC transporter ATP-binding protein
L2_023_246G1_scaffold_353_29
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30264..31403
DNA (1140bp) protein (380aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FQH2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22334.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
putative ABC transporter permease protein
L2_023_246G1_scaffold_353_30
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31403..32344
DNA (942bp) protein (314aa)
ABC transporter, permease protein n=2 Tax=Clostridium RepID=B6FQH3_9CLOT
ABC transporter, permease protein {ECO:0000313|EMBL:EEA81713.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
putative ABC transporter permease protein
Displaying items 1-30 of 42 in total

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