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L2_023_246G1_scaffold_361

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_023_246G1_scaffold_361_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..215
DNA (213bp) protein (71aa)
Reverse rubrerythrin-1 {ECO:0000313|EMBL:EQI00478.1}; EC=1.11.1.1 {ECO:0000313|EMBL:EQI00478.1};; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
Reverse rubrerythrin-1 (Fragment) n=2 Tax=Clostridium difficile RepID=T3WJ02_CLODI
putative rubrerythrin (Rr)
L2_023_246G1_scaffold_361_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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475..1083
DNA (609bp) protein (203aa)
Dienelactone hydrolase family protein n=57 Tax=Clostridium difficile RepID=T2TPI4_CLODI
Dienelactone hydrolase family protein {ECO:0000313|EMBL:EQI00479.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
putative hydrolase
L2_023_246G1_scaffold_361_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1410..4307
DNA (2898bp) protein (966aa)
Diguanylate cyclase domain protein n=50 Tax=Clostridium difficile RepID=G6BQD4_CLODI
Diguanylate cyclase domain protein {ECO:0000313|EMBL:EQE66528.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
putative signaling protein
L2_023_246G1_scaffold_361_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4628..4840
DNA (213bp) protein (71aa)
FeoA domain protein n=220 Tax=Clostridium difficile RepID=C9XT14_CLODC
ferrous iron transport protein
Ferrous iron transport protein {ECO:0000313|EMBL:CCL29623.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_023_246G1_scaffold_361_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4853..5074
DNA (222bp) protein (74aa)
FeoA domain protein n=216 Tax=Clostridium difficile RepID=C9XT15_CLODC
ferrous iron transport protein A
FeoA domain protein {ECO:0000313|EMBL:EQE66530.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_023_246G1_scaffold_361_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5174..7330
DNA (2157bp) protein (719aa)
Ferrous iron transport protein B n=163 Tax=Clostridium difficile RepID=G6BQD1_CLODI
ferrous iron transport protein B
Ferrous iron transport protein B {ECO:0000313|EMBL:CCL21600.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L2_023_246G1_scaffold_361_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7356..7508
DNA (153bp) protein (51aa)
Uncharacterized protein n=202 Tax=Clostridium difficile RepID=Q18C01_CLOD6
hypothetical protein
Virus attachment p12 family protein {ECO:0000313|EMBL:EQG76149.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_023_246G1_scaffold_361_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7688..8398
DNA (711bp) protein (237aa)
Mitochondria biogenesis AIM24 family protein n=193 Tax=Clostridium difficile RepID=C9XT18_CLODC
hypothetical protein
Putative tryptophan RNA-binding attenuation protein {ECO:0000313|EMBL:CCL29627.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_023_246G1_scaffold_361_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8483..9253
DNA (771bp) protein (257aa)
Binding--dependent transport system inner membrane component family protein n=132 Tax=Clostridium difficile RepID=T3HHG5_CLODC
ssuC; ABC-type transport system, sulfonates-familypermease
Binding--dependent transport system inner membrane component family protein {ECO:0000313|EMBL:EQG76837.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_023_246G1_scaffold_361_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9246..9977
DNA (732bp) protein (244aa)
ABC-type transport system, sulfonates-family ATP-binding protein {ECO:0000313|EMBL:CDT21712.1}; EC=3.6.3.- {ECO:0000313|EMBL:CDT21712.1};; Uncharacterized protein {ECO:0000313|EMBL:CDS86516.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ABC transporter family protein n=7 Tax=Clostridium difficile RepID=T3HV72_CLODI
aliphatic sulfonates ABC transporter ATP-binding protein
L2_023_246G1_scaffold_361_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10011..10970
DNA (960bp) protein (320aa)
ABC transporter, substrate-binding , aliphatic sulfonates family protein n=196 Tax=Clostridium difficile RepID=T3HDC8_CLODC
aliphatic sulfonate ABC transporter substrate-binding protein
ABC transporter, substrate-binding , aliphatic sulfonates family protein {ECO:0000313|EMBL:EQE66533.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_023_246G1_scaffold_361_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11068..11664)
DNA (597bp) protein (199aa)
Uncharacterized protein n=194 Tax=Clostridium difficile RepID=Q18C06_CLOD6
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ32274.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_023_246G1_scaffold_361_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11910..12509
DNA (600bp) protein (200aa)
Uncharacterized protein n=194 Tax=Clostridium difficile RepID=G6BQC4_CLODI
putative lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:EQE66513.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_023_246G1_scaffold_361_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12679..13074)
DNA (396bp) protein (132aa)
Uncharacterized protein n=15 Tax=Clostridium difficile RepID=T2UWA6_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CDS86524.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
hypothetical protein
L2_023_246G1_scaffold_361_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13257..14201
DNA (945bp) protein (315aa)
DeoR-like helix-turn-helix domain protein n=71 Tax=Clostridium difficile RepID=T3HEQ7_CLODC
DeoR family transcriptional regulator
DeoR-like helix-turn-helix domain protein {ECO:0000313|EMBL:EQE66512.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_023_246G1_scaffold_361_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14703..15668
DNA (966bp) protein (322aa)
metN; ABC-type transport system, methionine-specificATP-binding protein (EC:3.6.3.-)
Methionine import ATP-binding protein MetN {ECO:0000256|HAMAP-Rule:MF_01719}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01719};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Methionine import ATP-binding protein MetN n=126 Tax=Clostridium difficile RepID=METN_CLOD6
L2_023_246G1_scaffold_361_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15661..16317
DNA (657bp) protein (219aa)
Binding--dependent transport system inner membrane component family protein n=207 Tax=Clostridium difficile RepID=C9XT41_CLODC
metI; D-methionine ABC transporter permease
Binding--dependent transport system inner membrane component family protein {ECO:0000313|EMBL:EQI85567.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
L2_023_246G1_scaffold_361_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16353..17144
DNA (792bp) protein (264aa)
Lipo, YaeC family protein n=181 Tax=Clostridium difficile RepID=C9XT42_CLODC
metQ; D-methionine ABC transporter substrate-binding protein
Lipo, YaeC family protein {ECO:0000313|EMBL:EQE66510.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_023_246G1_scaffold_361_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17292..20030
DNA (2739bp) protein (913aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Sensory box protein n=61 Tax=Clostridium difficile RepID=T2TLR3_CLODI
two-component sensor histidine kinase
L2_023_246G1_scaffold_361_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20139..20747
DNA (609bp) protein (203aa)
Putative 3-methyladenine DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097343}; EC=3.2.2.- {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097340};; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
Putative 3-methyladenine DNA glycosylase n=212 Tax=Clostridium difficile RepID=3MGH_CLOD6
3-methyladenine DNA glycosylase
L2_023_246G1_scaffold_361_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21626..22216
DNA (591bp) protein (197aa)
Cupin domain protein n=14 Tax=Clostridium difficile RepID=G6B5L9_CLODI
transcriptional regulator
Cupin domain protein {ECO:0000313|EMBL:EHJ32265.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L2_023_246G1_scaffold_361_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22256..23059
DNA (804bp) protein (268aa)
proC; Pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Pyrroline-5-carboxylate reductase n=184 Tax=Clostridium difficile RepID=T3HG91_CLODC
L2_023_246G1_scaffold_361_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23140..24315)
DNA (1176bp) protein (392aa)
Signal peptide protein, YSIRK family n=154 Tax=Clostridium difficile RepID=G6B5L7_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQI00500.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L2_023_246G1_scaffold_361_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24582..25058
DNA (477bp) protein (159aa)
Uncharacterized protein n=132 Tax=Clostridium difficile RepID=D5Q6E9_CLODI
Type I restriction enzyme R family protein {ECO:0000313|EMBL:EQG75986.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
uncharacterised protein
L2_023_246G1_scaffold_361_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25349..26233
DNA (885bp) protein (295aa)
RNA polymerase sigma factor n=1 Tax=Clostridium difficile (strain 630) RepID=Q18C16_CLOD6
rpoD2; RNA polymerase sigma factor rpoD
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L2_023_246G1_scaffold_361_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26707..28251
DNA (1545bp) protein (515aa)
Integral membrane protein MviN n=8 Tax=Clostridium difficile RepID=T2VWS0_CLODI
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
virulence factor MviN-like protein
L2_023_246G1_scaffold_361_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28287..28946
DNA (660bp) protein (220aa)
Deoxyribose-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202}; Short=DERA {ECO:0000256|HAMAP-Rule:MF_00114};; EC=4.1.2.4 {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202};; 2-deoxy-D-ribose 5-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114}; Phosphodeoxyriboaldolase {ECO:0000256|HAMAP-Rule:MF_00114}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Deoxyribose-phosphate aldolase n=182 Tax=Clostridium difficile RepID=DEOC_CLOD6
deoC; deoxyribose-phosphate aldolase
L2_023_246G1_scaffold_361_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29129..29497
DNA (369bp) protein (123aa)
Bacterial regulatory s, gntR family protein n=204 Tax=Clostridium difficile RepID=C9XJA4_CLODC
transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:CCL29648.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_023_246G1_scaffold_361_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29501..30376
DNA (876bp) protein (292aa)
ABC-type transport system, multidrug-family ATP-binding protein {ECO:0000313|EMBL:CDT22041.1}; EC=3.6.3.- {ECO:0000313|EMBL:CDT22041.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ABC-type transport system, multidrug-familyATP-binding protein (EC:3.6.3.-)
ABC transporter family protein n=7 Tax=Clostridium difficile RepID=T3HW67_CLODI
L2_023_246G1_scaffold_361_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30377..31171
DNA (795bp) protein (265aa)
ABC-type transport system, multidrug-family permease n=120 Tax=Clostridium difficile RepID=Q18C23_CLOD6
ABC transporter permease
ABC-type transport system, multidrug-family permease {ECO:0000313|EMBL:CCL29650.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Displaying items 1-30 of 53 in total

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