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L2_023_246G1_scaffold_493

Search features with annotation key words

Displaying items 1-30 of 69 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_023_246G1_scaffold_493_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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556..1128
DNA (573bp) protein (191aa)
Lacto-N-biose phosphorylase {ECO:0000313|EMBL:BAD80752.1}; EC=2.4.1.211 {ECO:0000313|EMBL:BAD80752.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
LnbP lacto-N-biose phosphorylase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NX47_BIFBP
lnbP; lacto-N-biose phorylase
L2_023_246G1_scaffold_493_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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1357..2298
DNA (942bp) protein (314aa)
sugar kinase (EC:2.7.1.2)
Sugar kinase, ROK family n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NX46_BIFBP
Sugar kinase, ROK family protein {ECO:0000313|EMBL:EKF16603.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_023_246G1_scaffold_493_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2441..3595)
DNA (1155bp) protein (385aa)
Sugar kinase, ROK family {ECO:0000313|EMBL:KFI43090.1}; EC=2.7.1.2 {ECO:0000313|EMBL:KFI43090.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Sugar kinase, ROK family n=5 Tax=Bifidobacterium RepID=E4NX45_BIFBP
xylR; xylose repressor
L2_023_246G1_scaffold_493_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3885..4973
DNA (1089bp) protein (363aa)
Putative mucin-desulfating sulfatase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DRN7_BIFBI
N-acetylhexosamine-1-kinase NahK {ECO:0000313|EMBL:KFI43089.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
nahK; N-acetylhexosamine-1-kinase NahK
L2_023_246G1_scaffold_493_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4973..6487
DNA (1515bp) protein (505aa)
galT2; galactose-1-phosphate uridylyltransferase GalT2 (EC:2.7.7.12)
Galactose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; Short=Gal-1-P uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571};; EC=2.7.7.12 {ECO:0000256|HAMAP-Rule:MF_00571};; UDP-glucose--hexose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Galactose-1-phosphate uridylyltransferase n=4 Tax=Bifidobacterium bifidum RepID=E4NX43_BIFBP
L2_023_246G1_scaffold_493_6
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6533..7555
DNA (1023bp) protein (341aa)
galE; UDP-glucose 4-epimerase GalE (EC:5.1.3.2)
GalE UDP-glucose 4-epimerase (Leloir pathway) n=3 Tax=Bifidobacterium RepID=E4NX42_BIFBP
GalE UDP-glucose 4-epimerase (Leloir pathway) {ECO:0000313|EMBL:CDB23233.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_023_246G1_scaffold_493_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7966..9567)
DNA (1602bp) protein (534aa)
ABC transporter ATP-binding protein (EC:3.6.3.30)
ATP-binding protein of ABC transporter system n=7 Tax=Bifidobacterium RepID=E3EQ49_BIFBS
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFR50424.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L2_023_246G1_scaffold_493_8
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9799..10548
DNA (750bp) protein (250aa)
vanYB; D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GPP0_9BIFI
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:CDB23231.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_023_246G1_scaffold_493_9
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10577..12016)
DNA (1440bp) protein (480aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
sensory transduction protein kinase (EC:2.7.13.3)
Sensory transduction protein kinase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GFP6_9BIFI
L2_023_246G1_scaffold_493_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12013..12678)
DNA (666bp) protein (222aa)
two-component response regulator (EC:2.7.13.3)
Two-component response regulator n=5 Tax=Bifidobacterium bifidum RepID=E4NX38_BIFBP
Two-component response regulator {ECO:0000313|EMBL:EKF15324.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_023_246G1_scaffold_493_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13118..13522
DNA (405bp) protein (135aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQ44_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53194.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_023_246G1_scaffold_493_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13576..14217
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V9X6_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR50418.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
L2_023_246G1_scaffold_493_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14437..17454
DNA (3018bp) protein (1006aa)
UvrABC system protein A n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CEG6_BIFBI
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
uvrA; excinuclease ABC subunit A
L2_023_246G1_scaffold_493_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17451..19793
DNA (2343bp) protein (781aa)
UvrABC system protein C n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WI46_BIFBI
uvrC; excinuclease ABC subunit C
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_023_246G1_scaffold_493_15
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19986..20948
DNA (963bp) protein (321aa)
aroE; shikimate 5-dehydrogenase AroE (EC:1.1.1.25)
AroE Shikimate 5-dehydrogenase n=2 Tax=Bifidobacterium RepID=E4NX33_BIFBP
AroE Shikimate 5-dehydrogenase {ECO:0000313|EMBL:CDB23224.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_023_246G1_scaffold_493_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20948..21892
DNA (945bp) protein (315aa)
UPF0042 nucleotide-binding protein BBB_0965 n=4 Tax=Bifidobacterium bifidum RepID=I3WI44_BIFBI
hypothetical protein
Nucleotide-binding protein BIFI_1532 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_023_246G1_scaffold_493_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22059..23030
DNA (972bp) protein (324aa)
Putative sporulation transcription regulator WhiA n=7 Tax=Bifidobacterium RepID=E3EQ38_BIFBS
hypothetical protein
Putative sporulation transcription regulator WhiA {ECO:0000256|HAMAP-Rule:MF_01420}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L2_023_246G1_scaffold_493_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23188..24393
DNA (1206bp) protein (402aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
pgk; phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase n=2 Tax=Bifidobacterium bifidum RepID=E4V9X0_BIFBI
L2_023_246G1_scaffold_493_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24462..25256
DNA (795bp) protein (265aa)
tpiA; triose-phosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Triosephosphate isomerase n=6 Tax=Bifidobacterium bifidum RepID=E3EQ36_BIFBS
L2_023_246G1_scaffold_493_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25335..25583
DNA (249bp) protein (83aa)
Preprotein translocase, SecG subunit n=8 Tax=Bifidobacterium RepID=E3EQ35_BIFBS
secG; protein translocase subunit SecG
Preprotein translocase, SecG subunit {ECO:0000313|EMBL:ADO53185.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_023_246G1_scaffold_493_21
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25691..26641
DNA (951bp) protein (317aa)
L-lactate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00488}; Short=L-LDH {ECO:0000256|HAMAP-Rule:MF_00488};; EC=1.1.1.27 {ECO:0000256|HAMAP-Rule:MF_00488};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
ldhL; L-lactate dehydrogenase (EC:1.1.1.27)
L-lactate dehydrogenase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GCF9_9BIFI
L2_023_246G1_scaffold_493_22
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26695..27531
DNA (837bp) protein (279aa)
DNA polymerase III subunit beta (EC:3.1.3.18)
DNA polymerase III, beta chain n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NX26_BIFBP
Putative hydrolase {ECO:0000313|EMBL:CDB21999.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_023_246G1_scaffold_493_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27528..28898
DNA (1371bp) protein (457aa)
MATE efflux family protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2BW44_BIFBI
Na driven multidrug efflux pump {ECO:0000313|EMBL:KFI43071.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Na+ driven multidrug efflux pump
L2_023_246G1_scaffold_493_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28879..29211
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CD09_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI82425.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_023_246G1_scaffold_493_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29290..29496
DNA (207bp) protein (69aa)
Uncharacterized protein n=3 Tax=Bifidobacterium RepID=K2HSB6_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI82426.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L2_023_246G1_scaffold_493_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29778..31190)
DNA (1413bp) protein (471aa)
Branched-chain amino acid transport system II carrier protein n=2 Tax=Bifidobacterium bifidum RepID=K2HUY4_BIFBI
Branched-chain amino acid transport protein {ECO:0000313|EMBL:BAQ98223.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
branched-chain amino acid transport system II carrier protein
L2_023_246G1_scaffold_493_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31415..32356)
DNA (942bp) protein (314aa)
Uncharacterized protein n=4 Tax=Bifidobacterium bifidum RepID=U2CEI1_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:BAQ98222.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L2_023_246G1_scaffold_493_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32470..33573)
DNA (1104bp) protein (368aa)
Transaldolase {ECO:0000256|HAMAP-Rule:MF_00493, ECO:0000256|SAAS:SAAS00118670}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00493, ECO:0000256|SAAS:SAAS00118670};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Transaldolase n=8 Tax=Bifidobacterium bifidum RepID=E3EQ28_BIFBS
tal; transaldolase
L2_023_246G1_scaffold_493_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33706..35814)
DNA (2109bp) protein (703aa)
Transketolase {ECO:0000313|EMBL:EKF15293.1}; EC=2.2.1.1 {ECO:0000313|EMBL:EKF15293.1};; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
Transketolase n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2MT56_BIFBI
tkt; transketolase
L2_023_246G1_scaffold_493_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36162..37418
DNA (1257bp) protein (419aa)
Heat-inducible transcription repressor HrcA n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQ26_BIFBS
hrcA; Heat-inducible transcription repressor HrcA
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Displaying items 1-30 of 69 in total

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