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L2_026_000G1_scaffold_17

Search features with annotation key words

Displaying items 1-30 of 158 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_026_000G1_scaffold_17_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

54..2396
DNA (2343bp) protein (781aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2I5T4_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:BAQ98838.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L2_026_000G1_scaffold_17_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2427..3245
DNA (819bp) protein (273aa)
Transcriptional regulator n=9 Tax=Bifidobacterium RepID=E4NZL6_BIFBP
putative transcriptional regulator, PucR family protein
Putative transcriptional regulator, PucR family protein {ECO:0000313|EMBL:AFL05211.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_026_000G1_scaffold_17_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3412..4113)
DNA (702bp) protein (234aa)
Endonuclease NucS {ECO:0000256|HAMAP-Rule:MF_00722}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00722};; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
Endonuclease NucS n=2 Tax=Bifidobacterium bifidum RepID=K2H805_BIFBI
hypothetical protein
L2_026_000G1_scaffold_17_4
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4476..4778)
DNA (303bp) protein (101aa)
AtpC ATP synthase epsilon chain n=8 Tax=Bifidobacterium RepID=E4NZL8_BIFBP
ATP synthase subunit epsilon
AtpC ATP synthase epsilon chain {ECO:0000313|EMBL:CDB23080.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_026_000G1_scaffold_17_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4778..6262)
DNA (1485bp) protein (495aa)
atpD; ATP synthase subunit beta (EC:3.6.3.14)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
ATP synthase subunit beta n=6 Tax=Bifidobacterium bifidum RepID=E3EN60_BIFBS
L2_026_000G1_scaffold_17_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6271..7209)
DNA (939bp) protein (313aa)
ATP synthase gamma chain n=5 Tax=Bifidobacterium bifidum RepID=E4NZM0_BIFBP
atpG; ATP synthase subunit gamma
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L2_026_000G1_scaffold_17_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7213..8892)
DNA (1680bp) protein (560aa)
atpA; ATP synthase subunit alpha (EC:3.6.3.14)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
ATP synthase subunit alpha n=6 Tax=Bifidobacterium bifidum RepID=E4NZM1_BIFBP
L2_026_000G1_scaffold_17_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8966..9793)
DNA (828bp) protein (276aa)
ATP synthase subunit delta n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EN63_BIFBS
atpH; ATP synthase subunit delta
ATP synthase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_026_000G1_scaffold_17_9
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9823..10353)
DNA (531bp) protein (177aa)
ATP synthase subunit b n=7 Tax=Bifidobacterium RepID=E3EN64_BIFBS
atpF; ATP synthase subunit B
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_026_000G1_scaffold_17_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10404..10634)
DNA (231bp) protein (77aa)
ATP synthase C chain n=8 Tax=Bifidobacterium RepID=E3EN65_BIFBS
atpE; ATP synthase subunit C
ATP synthase subunit c {ECO:0000256|SAAS:SAAS00242779}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_026_000G1_scaffold_17_11
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10746..11558)
DNA (813bp) protein (271aa)
atpB; ATP synthase F0 subunit A (EC:3.6.3.14)
ATP synthase subunit a n=8 Tax=Bifidobacterium RepID=E3EN66_BIFBS
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_026_000G1_scaffold_17_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12088..13122)
DNA (1035bp) protein (345aa)
Homoserine O-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084556}; EC=2.3.1.46 {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084596};; Homoserine O-transsuccinylase {ECO:0000256|HAMAP-Rule:MF_00295}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Homoserine O-succinyltransferase n=2 Tax=Bifidobacterium bifidum RepID=E3EN67_BIFBS
metA; Homoserine O-succinyltransferase
L2_026_000G1_scaffold_17_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13323..13685)
DNA (363bp) protein (121aa)
Uncharacterized protein n=4 Tax=Bifidobacterium RepID=E4VBD6_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53801.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_026_000G1_scaffold_17_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14010..14237
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HUJ1_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKE50132.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L2_026_000G1_scaffold_17_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14388..16661)
DNA (2274bp) protein (758aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WK31_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL05244.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_026_000G1_scaffold_17_16
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16885..19200
DNA (2316bp) protein (772aa)
alpha-amylase (EC:3.2.1.1)
Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase {ECO:0000256|HAMAP-Rule:MF_02124}; Short=GMPMT {ECO:0000256|HAMAP-Rule:MF_02124};; EC=2.4.99.16 {ECO:0000256|HAMAP-Rule:MF_02124};; (1->4)-alpha-D-glucan:maltose-1-phosphate alpha-D-maltosyltransferase {ECO:0000256|HAMAP-Rule:MF_02124}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZN0_BIFBP
L2_026_000G1_scaffold_17_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19367..19861
DNA (495bp) protein (165aa)
ppa; inorganic pyrophosphatase (EC:3.6.1.1)
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
Inorganic pyrophosphatase n=8 Tax=Bifidobacterium RepID=E3EN72_BIFBS
L2_026_000G1_scaffold_17_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20439..20969
DNA (531bp) protein (177aa)
Putative manganese efflux pump MntP n=5 Tax=Bifidobacterium RepID=E4NZN2_BIFBP
hypothetical protein
Putative manganese efflux pump MntP {ECO:0000256|HAMAP-Rule:MF_01521}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_026_000G1_scaffold_17_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21115..21402)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DSV0_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI82826.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_026_000G1_scaffold_17_20
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21447..22196)
DNA (750bp) protein (250aa)
Uncharacterized protein n=7 Tax=Bifidobacterium RepID=I3WK36_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB24596.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_026_000G1_scaffold_17_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22370..23113
DNA (744bp) protein (248aa)
GlnR Transcriptional regulatory protein n=4 Tax=Bifidobacterium RepID=E4NZN4_BIFBP
glnR; transcriptional regulator
Transcriptional regulatory protein {ECO:0000313|EMBL:AFL05250.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_026_000G1_scaffold_17_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23126..23788
DNA (663bp) protein (221aa)
nth; endonuclease III (EC:4.2.99.18)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Endonuclease III n=3 Tax=Bifidobacterium bifidum RepID=E3EN76_BIFBS
L2_026_000G1_scaffold_17_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23872..25428
DNA (1557bp) protein (519aa)
Putative D, D-dipeptide-binding periplasmic protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WK39_BIFBI
ddpA; putative D, D-dipeptide-binding periplasmic protein
Putative D, D-dipeptide-binding periplasmic protein {ECO:0000313|EMBL:AFL05252.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_026_000G1_scaffold_17_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


25511..28252
DNA (2742bp) protein (914aa)
Valine--tRNA ligase {ECO:0000256|SAAS:SAAS00105779}; EC=6.1.1.9 {ECO:0000256|SAAS:SAAS00105779};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Valine--tRNA ligase n=4 Tax=Bifidobacterium RepID=E3EN78_BIFBS
valS; valyl-tRNA synthetase
L2_026_000G1_scaffold_17_25
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28370..30562)
DNA (2193bp) protein (731aa)
Uncharacterized protein n=4 Tax=Bifidobacterium RepID=R6GJH8_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB24580.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
L2_026_000G1_scaffold_17_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30666..31106)
DNA (441bp) protein (147aa)
chorismate mutase (EC:5.4.99.5)
TyrA Chorismate mutase n=7 Tax=Bifidobacterium RepID=E4NZN9_BIFBP
Chorismate mutase {ECO:0000313|EMBL:ERI82833.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_026_000G1_scaffold_17_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31207..31749)
DNA (543bp) protein (181aa)
Transcriptional regulator n=2 Tax=Bifidobacterium bifidum RepID=K2H8W7_BIFBI
Transcriptional regulator {ECO:0000313|EMBL:EKF15164.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
AsnC family transcriptional regulator
L2_026_000G1_scaffold_17_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31919..33148
DNA (1230bp) protein (410aa)
aspC; aspartate aminotransferase (EC:2.6.1.1)
AspC Aspartate aminotransferase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZP1_BIFBP
Aspartate aminotransferase {ECO:0000313|EMBL:EKF15163.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_026_000G1_scaffold_17_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33246..35285)
DNA (2040bp) protein (680aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Transcription termination factor Rho n=2 Tax=Bifidobacterium bifidum RepID=K2I6G3_BIFBI
rho; transcription termination factor
L2_026_000G1_scaffold_17_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35517..37130)
DNA (1614bp) protein (538aa)
Putative uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E3EN84_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53817.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Displaying items 1-30 of 158 in total

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