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L2_026_000G1_scaffold_273

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_026_000G1_scaffold_273_1
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..336
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PWJ8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22851.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
conserved hypothetical protein (putative transposase or invertase)
L2_026_000G1_scaffold_273_2
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

565..702
DNA (138bp) protein (46aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PGW6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22850.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_026_000G1_scaffold_273_3
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

699..1256
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PES4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22848.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_026_000G1_scaffold_273_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1347..2060
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QLK2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22847.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
polysaccharide export protein
L2_026_000G1_scaffold_273_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2137..2880
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PWJ4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22846.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
sortase, SrtB family
L2_026_000G1_scaffold_273_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2873..3838
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PGW2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22845.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
cell envelope-related transcriptional attenuator
L2_026_000G1_scaffold_273_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3895..4506
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PPW2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22844.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_026_000G1_scaffold_273_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4596..5315
DNA (720bp) protein (240aa)
Capsular polysaccharide biosynthesis protein (EC:3.1.3.48)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PES0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22843.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_026_000G1_scaffold_273_9
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5332..6021
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QLJ6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22842.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
capsular exopolysaccharide family
L2_026_000G1_scaffold_273_10
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6171..10019
DNA (3849bp) protein (1283aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=2 Tax=Clostridium RepID=B6FLB3_9CLOT
L2_026_000G1_scaffold_273_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10034..13729
DNA (3696bp) protein (1232aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=2 Tax=Clostridium RepID=B6FLB4_9CLOT
L2_026_000G1_scaffold_273_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13798..15441
DNA (1644bp) protein (548aa)
pdcA; diguanylate kinase signaling protein (EC:2.7.7.65)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PPV7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22839.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_026_000G1_scaffold_273_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15493..16569
DNA (1077bp) protein (359aa)
pepQ; Xaa-Pro dipeptidase (EC:3.4.13.9)
Creatinase n=2 Tax=Clostridium RepID=B6FLB6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22838.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_026_000G1_scaffold_273_14
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16579..18009
DNA (1431bp) protein (477aa)
Xaa-His dipeptidase n=2 Tax=Clostridium RepID=B6FLB9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22837.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
aminoacyl-histidine dipeptidase
L2_026_000G1_scaffold_273_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18079..18579)
DNA (501bp) protein (167aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PWI3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22836.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
L2_026_000G1_scaffold_273_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18782..19351
DNA (570bp) protein (190aa)
HDIG domain protein n=2 Tax=Clostridium RepID=B6FLC1_9CLOT
HDIG domain protein {ECO:0000313|EMBL:EEA83164.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
HD domain-containing protein
L2_026_000G1_scaffold_273_17
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19355..20266
DNA (912bp) protein (304aa)
Transporter, auxin efflux carrier (AEC) family protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FLC2_9CLOT
Transporter, auxin efflux carrier (AEC) family protein {ECO:0000313|EMBL:EEA83165.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
putative permease
L2_026_000G1_scaffold_273_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20293..22137
DNA (1845bp) protein (615aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PER3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22833.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
signal transduction histidine kinase, LytS
L2_026_000G1_scaffold_273_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22236..22982
DNA (747bp) protein (249aa)
Transcriptional regulator, AraC family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FLC4_9CLOT
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EEA83167.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
two component AraC family transcriptional regulator
L2_026_000G1_scaffold_273_20
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


23171..23593
DNA (423bp) protein (141aa)
30S ribosomal protein S12 n=2 Tax=Clostridium RepID=B6FLC5_9CLOT
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
SSU ribosomal protein S12P
L2_026_000G1_scaffold_273_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


23808..24278
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=3 Tax=root RepID=B6FLC6_9CLOT
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
30S ribosomal protein S7
L2_026_000G1_scaffold_273_22
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24323..26440
DNA (2118bp) protein (706aa)
Elongation factor G n=2 Tax=Lachnospiraceae RepID=S2YEG7_9FIRM
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
elongation factor G
L2_026_000G1_scaffold_273_23
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26584..27777
DNA (1194bp) protein (398aa)
translation elongation factor 1A (EF-1A/EF-Tu) (EC:3.6.5.3)
Elongation factor Tu n=3 Tax=Clostridium RepID=B6FLC8_9CLOT
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_026_000G1_scaffold_273_24
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28227..33116
DNA (4890bp) protein (1630aa)
F5/8 type C domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FLC9_9CLOT
F5/8 type C domain protein {ECO:0000313|EMBL:EEA83172.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
glycosyl hydrolase
L2_026_000G1_scaffold_273_25
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33187..38157
DNA (4971bp) protein (1657aa)
F5/8 type C domain protein (Fragment) n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FLD0_9CLOT
F5/8 type C domain protein {ECO:0000313|EMBL:EEA83116.1}; Flags: Fragment;; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
alpha-N-acetylglucosaminidase
L2_026_000G1_scaffold_273_26
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38216..39085)
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FLD1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA83117.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
integral membrane protein
L2_026_000G1_scaffold_273_27
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


39702..40019
DNA (318bp) protein (106aa)
30S ribosomal protein S10 n=7 Tax=Clostridiales RepID=B0NFI2_CLOSV
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
SSU ribosomal protein S10P
L2_026_000G1_scaffold_273_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


40109..40789
DNA (681bp) protein (227aa)
50S ribosomal protein L3 n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FLD3_9CLOT
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
LSU ribosomal protein L3P
L2_026_000G1_scaffold_273_29
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


40818..41438
DNA (621bp) protein (207aa)
50S ribosomal protein L4 n=2 Tax=root RepID=B6FLD4_9CLOT
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
LSU ribosomal protein L4P
L2_026_000G1_scaffold_273_30
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


41438..41737
DNA (300bp) protein (100aa)
50S ribosomal protein L23 n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FLD5_9CLOT
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Ribosomal protein L23
Displaying items 1-30 of 60 in total

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