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L2_026_000G1_scaffold_581

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_026_000G1_scaffold_581_1
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..343)
DNA (342bp) protein (114aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
aspartate kinase (EC:2.7.2.4)
Aspartokinase n=1 Tax=Clostridium nexile CAG:348 RepID=R6PMU3_9CLOT
L2_026_000G1_scaffold_581_2
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(353..1555)
DNA (1203bp) protein (401aa)
phosphoglycerate mutase (EC:5.4.2.1)
Proposed homoserine kinase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FRH3_9CLOT
Proposed homoserine kinase {ECO:0000313|EMBL:EEA81260.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_026_000G1_scaffold_581_3
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1584..2798)
DNA (1215bp) protein (405aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase n=2 Tax=Clostridium RepID=B6FRH2_9CLOT
L2_026_000G1_scaffold_581_4
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2806..3246)
DNA (441bp) protein (147aa)
UPF0735 ACT domain-containing protein CLONEX_02743 n=2 Tax=Clostridium RepID=B6FRH1_9CLOT
UPF0735 ACT domain-containing protein CLONEX_02743 {ECO:0000256|HAMAP-Rule:MF_00707}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
amino acid-binding ACT protein
L2_026_000G1_scaffold_581_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3249..4190)
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 PF23_9CLOT">RepID=R6PF23_9CLOT
Peptide chain release factor 2 {ECO:0000256|SAAS:SAAS00090452}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
peptide chain release factor 2
L2_026_000G1_scaffold_581_6
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4378..6942)
DNA (2565bp) protein (855aa)
Protein translocase subunit SecA n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FRG9_9CLOT
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
protein translocase subunit secA
L2_026_000G1_scaffold_581_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7024..7812)
DNA (789bp) protein (263aa)
phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type (EC:5.3.1.16)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PCY5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22163.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_026_000G1_scaffold_581_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7902..8219)
DNA (318bp) protein (106aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FRG6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22162.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_026_000G1_scaffold_581_9
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8343..9101)
DNA (759bp) protein (253aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Clostridium nexile CAG:348 RepID=R6PUI4_9CLOT
L2_026_000G1_scaffold_581_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9222..10106)
DNA (885bp) protein (295aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Clostridium nexile CAG:348 PF20_9CLOT">RepID=R6PF20_9CLOT
L2_026_000G1_scaffold_581_11
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10191..10820)
DNA (630bp) protein (210aa)
Single-strand binding family protein n=2 Tax=Clostridium RepID=B6FRG3_9CLOT
Single-strand binding family protein {ECO:0000313|EMBL:EEA81391.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Single-stranded DNA-binding protein
L2_026_000G1_scaffold_581_12
unknown

Not on your lists

comp(10810..10947)
DNA (138bp) protein (46aa)

This feature has no annotations

L2_026_000G1_scaffold_581_13
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11075..12898
DNA (1824bp) protein (608aa)
GTP-binding protein TypA n=2 Tax=Clostridium RepID=B6FRG2_9CLOT
GTP-binding protein TypA {ECO:0000313|EMBL:EEA81390.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
GTP-binding protein TypA/BipA
L2_026_000G1_scaffold_581_14
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13039..13575
DNA (537bp) protein (179aa)
Ribosomal subunit interface protein n=2 Tax=Clostridium RepID=B6FRG1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22157.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ribosomal subunit interface protein
L2_026_000G1_scaffold_581_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13609..14265)
DNA (657bp) protein (219aa)
YigZ family protein n=2 Tax=Clostridium RepID=B6FRG0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22156.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
conserved hypothetical protein TIGR00257
L2_026_000G1_scaffold_581_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14433..16958
DNA (2526bp) protein (842aa)
Transglycosylase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FRF9_9CLOT
Transglycosylase {ECO:0000313|EMBL:EEA81387.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
glycosyltransferase family b-glycosyltransferase/PBP transpeptidase
L2_026_000G1_scaffold_581_17
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17002..17934)
DNA (933bp) protein (311aa)
glucokinase (EC:2.7.1.2)
ROK family protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FRF8_9CLOT
ROK family protein {ECO:0000313|EMBL:EEA81386.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_026_000G1_scaffold_581_18
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17948..18856)
DNA (909bp) protein (303aa)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058435};; HPr(Ser) kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Hpr(Ser) kinase/phosphatase (EC:2.7.1.- 2.7.4.- 2.7.11.-)
HPr kinase/phosphorylase n=2 Tax=Clostridium RepID=B6FRF7_9CLOT
L2_026_000G1_scaffold_581_19
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18919..20757)
DNA (1839bp) protein (613aa)
UvrABC system protein C n=2 Tax=Clostridium RepID=B6FRF6_9CLOT
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
excinuclease ABC, C subunit
L2_026_000G1_scaffold_581_20
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20861..21064)
DNA (204bp) protein (68aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FRF5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81383.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted redox protein, regulator of disulfide bond formation
L2_026_000G1_scaffold_581_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21098..22192)
DNA (1095bp) protein (365aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FRF4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC21969.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
YeeE/YedE family (DUF395).
L2_026_000G1_scaffold_581_22
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22334..24334)
DNA (2001bp) protein (667aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ATP-dependent metalloprotease FtsH (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH n=2 Tax=Clostridium RepID=B6FRF2_9CLOT
L2_026_000G1_scaffold_581_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24528..26006
DNA (1479bp) protein (493aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FRF1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC21967.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_026_000G1_scaffold_581_24
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26062..27900)
DNA (1839bp) protein (613aa)
ABC transporter, ATP-binding protein n=2 Tax=Clostridium RepID=B6FRF0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC21966.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ABC-type multidrug transport system, ATPase and permease components
L2_026_000G1_scaffold_581_25
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27893..30130)
DNA (2238bp) protein (746aa)
ABC transporter, ATP-binding protein n=2 Tax=Clostridium RepID=B6FRE9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC21965.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ABC-type multidrug transport system, ATPase and permease components
L2_026_000G1_scaffold_581_26
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30149..30577)
DNA (429bp) protein (143aa)
Transcriptional regulator, MarR family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FRE8_9CLOT
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EEA81376.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
MarR family transcriptional regulator
L2_026_000G1_scaffold_581_27
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30778..31353)
DNA (576bp) protein (192aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FRE7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC21963.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_026_000G1_scaffold_581_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31512..32069
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FRE6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81374.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_026_000G1_scaffold_581_29
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32088..33269)
DNA (1182bp) protein (394aa)
Transporter, major facilitator family protein n=2 Tax=Clostridium RepID=B6FRE5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC21961.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Major Facilitator Superfamily.
Displaying 29 items

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