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L2_026_000M1_scaffold_228

Search features with annotation key words

Displaying items 1-30 of 63 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_026_000M1_scaffold_228_1
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..805
DNA (804bp) protein (268aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1TUI3_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:KJF39253.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
L2_026_000M1_scaffold_228_2
Blautia sp. CAG:52, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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944..1888
DNA (945bp) protein (315aa)
Putative transposase YhgA-like n=1 Tax=Blautia sp. CAG:52 RepID=R6G5A9_9FIRM
Putative transposase YhgA-like {ECO:0000313|EMBL:CDB20708.1}; TaxID=1262758 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:52.;"
Putative transposase, YhgA-like.
L2_026_000M1_scaffold_228_3
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1956..3440
DNA (1485bp) protein (495aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RNZ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC47014.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
hypothetical protein
L2_026_000M1_scaffold_228_4

Not on your lists

3854..4012
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1SH74_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC46711.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L2_026_000M1_scaffold_228_5
Anaeroglobus geminatus, Anaeroglobus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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4038..4271
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Anaeroglobus geminatus F0357 RepID=G9YG07_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM42437.1}; TaxID=861450 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Anaeroglobus.;" source="Anaeroglobus geminatus F0357.;"
L2_026_000M1_scaffold_228_6
unknown

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comp(4352..5074)
DNA (723bp) protein (241aa)

This feature has no annotations

L2_026_000M1_scaffold_228_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5253..5801)
DNA (549bp) protein (183aa)
Sigma-70 region 2 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN42_9FIRM
Sigma-70 region 2 {ECO:0000313|EMBL:EFB75977.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_026_000M1_scaffold_228_8
unknown

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comp(5882..6589)
DNA (708bp) protein (236aa)

This feature has no annotations

L2_026_000M1_scaffold_228_9
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6853..8250
DNA (1398bp) protein (466aa)
Amino acid carrier protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZMI0_9FIRM
Amino acid carrier protein {ECO:0000313|EMBL:EFQ05571.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
amino acid carrier protein
L2_026_000M1_scaffold_228_10
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8281..9774
DNA (1494bp) protein (498aa)
Na+/H+ antiporter family protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UHX2_9FIRM
Na+/H+ antiporter family protein {ECO:0000313|EMBL:CCZ77610.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
transporter, NhaC family (TC 2.A.35)
L2_026_000M1_scaffold_228_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9936..10844)
DNA (909bp) protein (303aa)
Pseudouridine synthase, RluA family {ECO:0000313|EMBL:EFB76559.1}; EC=5.4.99.- {ECO:0000313|EMBL:EFB76559.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Pseudouridine synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKQ1_9FIRM
RluA family pseudouridine synthase
L2_026_000M1_scaffold_228_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10841..12787)
DNA (1947bp) protein (649aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKQ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76560.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_026_000M1_scaffold_228_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13159..14541
DNA (1383bp) protein (461aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
miaB; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB (EC:2.-.-.-)
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL31_9FIRM
L2_026_000M1_scaffold_228_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14583..14990
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL30_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76688.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Protein of unknown function (DUF964).
L2_026_000M1_scaffold_228_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15142..17760
DNA (2619bp) protein (873aa)
DNA mismatch repair protein MutS n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL29_9FIRM
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA mismatch repair protein MutS
L2_026_000M1_scaffold_228_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17776..19896
DNA (2121bp) protein (707aa)
DNA mismatch repair protein MutL n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL28_9FIRM
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA mismatch repair protein MutL
L2_026_000M1_scaffold_228_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19889..20827
DNA (939bp) protein (313aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75)
tRNA dimethylallyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL27_9FIRM
L2_026_000M1_scaffold_228_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20846..22075
DNA (1230bp) protein (410aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL26_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76684.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_026_000M1_scaffold_228_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22194..22649
DNA (456bp) protein (152aa)
Cell division protein SepF n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL25_9FIRM
Cell division protein SepF {ECO:0000256|HAMAP-Rule:MF_01197}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_026_000M1_scaffold_228_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22633..23436
DNA (804bp) protein (268aa)
S4 domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL24_9FIRM
S4 domain protein {ECO:0000313|EMBL:EFB76682.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Uncharacterized conserved protein, contains S4-like domain
L2_026_000M1_scaffold_228_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23511..24479
DNA (969bp) protein (323aa)
DivIVA domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL23_9FIRM
DivIVA domain protein {ECO:0000313|EMBL:EFB76681.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_026_000M1_scaffold_228_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24533..27307
DNA (2775bp) protein (925aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02002}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ileS; Isoleucine-tRNA ligase (EC:6.1.1.5)
Isoleucine--tRNA ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL22_9FIRM
L2_026_000M1_scaffold_228_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27374..27871
DNA (498bp) protein (166aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
lipoprotein signal peptidase (EC:3.4.23.36)
Lipoprotein signal peptidase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL21_9FIRM
L2_026_000M1_scaffold_228_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27858..28790
DNA (933bp) protein (311aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.- 5.4.99.12)
Pseudouridine synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL20_9FIRM
L2_026_000M1_scaffold_228_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28787..29623
DNA (837bp) protein (279aa)
Cof-like hydrolase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL19_9FIRM
Cof-like hydrolase {ECO:0000313|EMBL:EFB76677.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
HAD-superfamily hydrolase
L2_026_000M1_scaffold_228_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29626..30099
DNA (474bp) protein (158aa)
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL18_9FIRM
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 {ECO:0000313|EMBL:EFB76676.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
FruA; phosphotransferase system, fructose-specific IIC component
L2_026_000M1_scaffold_228_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30433..31473
DNA (1041bp) protein (347aa)
ABC transporter substrate binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL17_9FIRM
ABC transporter substrate binding protein {ECO:0000313|EMBL:EFB76675.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type uncharacterized transport system, periplasmic component
L2_026_000M1_scaffold_228_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31573..32520
DNA (948bp) protein (316aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL16_9FIRM
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EFB76674.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type uncharacterized transport system, permease component
L2_026_000M1_scaffold_228_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32513..33307
DNA (795bp) protein (265aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL15_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB76673.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type uncharacterized transport system, ATPase component
L2_026_000M1_scaffold_228_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33499..35178
DNA (1680bp) protein (560aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL14_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76672.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Lysophospholipase L1 and related esterases
Displaying items 1-30 of 63 in total

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