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L2_026_000M1_scaffold_290

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_026_000M1_scaffold_290_1

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161..607
DNA (447bp) protein (149aa)
Rlx protein (Fragment) n=1 Tax=human gut metagenome RepID=K1SP65_9ZZZZ
Rlx protein {ECO:0000313|EMBL:EKC62457.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L2_026_000M1_scaffold_290_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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620..1819
DNA (1200bp) protein (400aa)
Site-specific recombinase, phage integrase family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRY3_9FIRM
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EFB74511.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
integrase protein
L2_026_000M1_scaffold_290_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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1982..3157
DNA (1176bp) protein (392aa)
Site-specific recombinase, phage integrase family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRY2_9FIRM
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EFB74510.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
site-specific recombinase XerC
L2_026_000M1_scaffold_290_4
unknown

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3154..3429
DNA (276bp) protein (92aa)

This feature has no annotations

L2_026_000M1_scaffold_290_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4159..5040)
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKK0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76508.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_026_000M1_scaffold_290_6
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5027..6418)
DNA (1392bp) protein (464aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RX53_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF40820.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Membrane-fusion protein
L2_026_000M1_scaffold_290_7
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6443..7279)
DNA (837bp) protein (279aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RX54_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL66231.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
L2_026_000M1_scaffold_290_8
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7261..8103)
DNA (843bp) protein (281aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RX55_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL66232.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
L2_026_000M1_scaffold_290_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8161..10425)
DNA (2265bp) protein (755aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN38_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75973.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type sugar transport system, periplasmic component
L2_026_000M1_scaffold_290_10
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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10564..11241
DNA (678bp) protein (226aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RX57_9FIRM
Transcriptional regulator {ECO:0000313|EMBL:KJF40822.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
transcriptional regulator
L2_026_000M1_scaffold_290_11
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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11235..12524
DNA (1290bp) protein (430aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RX58_9FIRM
integral membrane sensor signal transduction histidine kinase
L2_026_000M1_scaffold_290_12
unknown

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12841..13083
DNA (243bp) protein (81aa)

This feature has no annotations

L2_026_000M1_scaffold_290_13

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13608..14783
DNA (1176bp) protein (392aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1TG74_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC66494.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L2_026_000M1_scaffold_290_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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14780..15049
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQB4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75121.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_026_000M1_scaffold_290_15

Not on your lists

15036..16124
DNA (1089bp) protein (363aa)
Rlx protein (Fragment) n=1 Tax=human gut metagenome RepID=K1SP65_9ZZZZ
Rlx protein {ECO:0000313|EMBL:EKC62457.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L2_026_000M1_scaffold_290_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16283..17458
DNA (1176bp) protein (392aa)
Site-specific recombinase, phage integrase family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRY2_9FIRM
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EFB74510.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
site-specific recombinase XerC
L2_026_000M1_scaffold_290_17
unknown

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17455..17730
DNA (276bp) protein (92aa)

This feature has no annotations

L2_026_000M1_scaffold_290_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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18299..19891
DNA (1593bp) protein (531aa)
Response regulator receiver domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQV2_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EFB74967.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
AraC family transcriptional regulator
L2_026_000M1_scaffold_290_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19908..20864
DNA (957bp) protein (319aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQV1_9FIRM
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:EFB74966.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase.
L2_026_000M1_scaffold_290_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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20874..22250
DNA (1377bp) protein (459aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQV0_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB74965.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
sugar ABC transporter ATP-binding protein
L2_026_000M1_scaffold_290_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22231..23160
DNA (930bp) protein (310aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQU9_9FIRM
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EFB74964.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_026_000M1_scaffold_290_22
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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23294..24313
DNA (1020bp) protein (340aa)
Sugar-binding domain protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=D3ADH0_9CLOT
Sugar-binding domain protein {ECO:0000313|EMBL:EFD00148.1}; TaxID=566550 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi DSM 13479.;"
putative monosaccharide-transporting ATPase
L2_026_000M1_scaffold_290_23
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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24389..25891
DNA (1503bp) protein (501aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=D3ADG9_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFD00147.1}; TaxID=566550 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi DSM 13479.;"
putative ABC transporter ATP-binding protein
L2_026_000M1_scaffold_290_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25893..26855
DNA (963bp) protein (321aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQU6_9FIRM
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EFB74961.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
rbsC1; ribose transport system permease RbsC
L2_026_000M1_scaffold_290_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26877..27743
DNA (867bp) protein (289aa)
Metallo-beta-lactamase domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQU5_9FIRM
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:EFB74960.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_026_000M1_scaffold_290_26
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27938..28501)
DNA (564bp) protein (188aa)
DNA-3-methyladenine glycosylase I n=1 Tax=Clostridium sp. CAG:81 RepID=R5FZC3_9CLOT
DNA-3-methyladenine glycosylase I {ECO:0000313|EMBL:CCY10213.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
Tag; 3-Methyladenine DNA glycosylase
L2_026_000M1_scaffold_290_27
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28639..29499)
DNA (861bp) protein (287aa)
NAD-dependent protein deacetylases, SIR2 family n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GTI9_9FIRM
NAD-dependent protein deacetylases, SIR2 family
NAD-dependent protein deacetylases, SIR2 family {ECO:0000313|EMBL:CBL41131.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L2_026_000M1_scaffold_290_28
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29492..30481)
DNA (990bp) protein (330aa)
NAD-dependent protein deacetylases, SIR2 family n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GTI7_9FIRM
NAD-dependent protein deacetylases, SIR2 family
NAD-dependent protein deacetylases, SIR2 family {ECO:0000313|EMBL:CBL41129.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L2_026_000M1_scaffold_290_29
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

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30618..31061
DNA (444bp) protein (148aa)
Transcriptional regulator, BadM/Rrf2 family n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GTI6_9FIRM
transcriptional regulator, BadM/Rrf2 family
Transcriptional regulator, BadM/Rrf2 family {ECO:0000313|EMBL:CBL41128.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L2_026_000M1_scaffold_290_30
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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31209..31373
DNA (165bp) protein (55aa)
copper-(or silver)-translocating P-type ATPase (EC:3.6.3.4)
Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5FI88_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHF03849.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Displaying items 1-30 of 54 in total

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