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L2_026_000M1_scaffold_714

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_026_000M1_scaffold_714_1
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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348..1604
DNA (1257bp) protein (419aa)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative glycoside hydrolase (EC:3.2.1.-)
Beta-N-acetylhexosaminidase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGF8_9FIRM
L2_026_000M1_scaffold_714_2
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1774..2718)
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFS5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45786.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
auxin efflux carrier family protein
L2_026_000M1_scaffold_714_3
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2794..4092)
DNA (1299bp) protein (433aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=T5RIH7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EQN60286.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_026_000M1_scaffold_714_4
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4144..5079)
DNA (936bp) protein (312aa)
DNA polymerase III, delta prime subunit (EC:2.7.7.7)
DNA polymerase III, delta' subunit n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFS8_9FIRM
DNA polymerase III, delta' subunit {ECO:0000313|EMBL:EGJ45789.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_026_000M1_scaffold_714_5
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5111..6412)
DNA (1302bp) protein (434aa)
Arginine decarboxylase (EC:4.1.1.19)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFS9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45790.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_026_000M1_scaffold_714_6
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6493..7335)
DNA (843bp) protein (281aa)
SpoIIIJ-associated protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGF9_9FIRM
SpoIIIJ-associated protein {ECO:0000313|EMBL:EGJ45763.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Jag protein homolog
L2_026_000M1_scaffold_714_7
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7338..8840)
DNA (1503bp) protein (501aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=T5S065_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EQN60283.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_026_000M1_scaffold_714_8
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8881..9099)
DNA (219bp) protein (73aa)
Putative membrane protein insertion efficiency factor n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGG2_9FIRM
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_026_000M1_scaffold_714_9
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9096..9449)
DNA (354bp) protein (118aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
rnpA; ribonuclease P protein component (EC:3.1.26.5)
Ribonuclease P protein component n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGG3_9FIRM
L2_026_000M1_scaffold_714_10
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9696..9830)
DNA (135bp) protein (45aa)
Ribosomal protein L34 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGG4_9FIRM
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
50S ribosomal protein L34
L2_026_000M1_scaffold_714_11
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10397..11713
DNA (1317bp) protein (439aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Ruminococcaceae bacterium D16 RepID=T5RY41_9FIRM
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
dnaA; chromosomal replication initiator protein DnaA
L2_026_000M1_scaffold_714_12
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12038..13144
DNA (1107bp) protein (369aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
dnaN; DNA polymerase III beta subunit (EC:2.7.7.7)
DNA polymerase III subunit beta n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGG7_9FIRM
L2_026_000M1_scaffold_714_13
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13236..13451
DNA (216bp) protein (72aa)
Ribosome-associated protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGG8_9FIRM
Ribosome-associated protein {ECO:0000313|EMBL:EGJ45772.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_026_000M1_scaffold_714_14
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

13448..14551
DNA (1104bp) protein (368aa)
DNA replication and repair protein RecF n=1 Tax=Firmicutes bacterium ASF500 RepID=V2ZK41_9FIRM
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
recF; DNA replication and repair protein RecF
L2_026_000M1_scaffold_714_15
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14640..14942
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGH0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45774.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_026_000M1_scaffold_714_16
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14981..15268
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGH1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45775.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_026_000M1_scaffold_714_17
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

15395..17338
DNA (1944bp) protein (648aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
gyrB; DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Firmicutes bacterium ASF500 RepID=V2ZK46_9FIRM
L2_026_000M1_scaffold_714_18
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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17642..17869
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NQF2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDN01757.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
L2_026_000M1_scaffold_714_19
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists


17896..20460
DNA (2565bp) protein (855aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YII1_9FIRM
L2_026_000M1_scaffold_714_20
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

20499..20957
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2ZK50_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL15020.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
conserved hypothetical protein
L2_026_000M1_scaffold_714_21
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21251..21688
DNA (438bp) protein (146aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
rnhA; ribonuclease H (EC:3.1.26.4)
Ribonuclease H n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGH6_9FIRM
L2_026_000M1_scaffold_714_22
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists


22227..23648
DNA (1422bp) protein (474aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
glyQS; glycyl-tRNA synthetase (EC:6.1.1.14)
Glycine--tRNA ligase n=1 Tax=Firmicutes bacterium ASF500 RepID=V2XY07_9FIRM
L2_026_000M1_scaffold_714_23
unknown

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comp(23728..23898)
DNA (171bp) protein (57aa)

This feature has no annotations

L2_026_000M1_scaffold_714_24
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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24035..24391
DNA (357bp) protein (119aa)
DNA-binding helix-turn-helix protein n=2 Tax=Oscillibacter RepID=U2PZX6_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:ERK64766.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
Helix-turn-helix.
L2_026_000M1_scaffold_714_25
unknown

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24620..25237
DNA (618bp) protein (206aa)

This feature has no annotations

L2_026_000M1_scaffold_714_26
unknown

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comp(25539..25805)
DNA (267bp) protein (89aa)

This feature has no annotations

L2_026_000M1_scaffold_714_27
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26200..28029
DNA (1830bp) protein (610aa)
GTP-binding protein TypA/BipA n=1 Tax=Ruminococcaceae bacterium D16 RepID=T5RUQ1_9FIRM
GTP-binding protein TypA/BipA {ECO:0000313|EMBL:EQN60287.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
typA; GTP-binding protein TypA
L2_026_000M1_scaffold_714_28
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28265..28879)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFV4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45815.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_026_000M1_scaffold_714_29
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

Not on your lists

29131..29481
DNA (351bp) protein (117aa)
Transcriptional regulator PadR family n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5AIY8_9FIRM
Transcriptional regulator PadR family {ECO:0000313|EMBL:CCX39336.1}; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
PadR-like family transcriptional regulator
L2_026_000M1_scaffold_714_30
unknown

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29541..30119
DNA (579bp) protein (193aa)
Putative uncharacterized protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KIP7_CLOPH
hypothetical protein
Displaying 30 items

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