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L2_026_000M1_scaffold_783

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_026_000M1_scaffold_783_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..1396
DNA (1395bp) protein (465aa)
DNA repair protein radA n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKU8_9FIRM
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA repair protein RadA
L2_026_000M1_scaffold_783_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1408..2292
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKU7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76605.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_026_000M1_scaffold_783_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2289..3218
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKU6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76604.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_026_000M1_scaffold_783_4
unknown

Not on your lists

comp(3267..3542)
DNA (276bp) protein (92aa)

This feature has no annotations

L2_026_000M1_scaffold_783_5
unknown

Not on your lists

comp(3554..3763)
DNA (210bp) protein (70aa)

This feature has no annotations

L2_026_000M1_scaffold_783_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4258..5334
DNA (1077bp) protein (359aa)
Phage integrase SAM-like domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKU1_9FIRM
Phage integrase SAM-like domain protein {ECO:0000313|EMBL:EFB76599.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Site-specific recombinase XerD
L2_026_000M1_scaffold_783_7
unknown

Not on your lists

comp(5269..5925)
DNA (657bp) protein (219aa)

This feature has no annotations

L2_026_000M1_scaffold_783_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5925..6332)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76597.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_026_000M1_scaffold_783_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6391..6741)
DNA (351bp) protein (117aa)
Preprotein translocase, YajC subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT8_9FIRM
Preprotein translocase, YajC subunit {ECO:0000313|EMBL:EFB76596.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
preprotein translocase, YajC subunit
L2_026_000M1_scaffold_783_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6823..7956)
DNA (1134bp) protein (378aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
tRNA-guanine transglycosylase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT7_9FIRM
L2_026_000M1_scaffold_783_11
Streptococcus mutans, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8103..8705)
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Streptococcus mutans LJ23 RepID=U3SS19_STRMG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EMC24869.1}; TaxID=857119 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus mutans SM6.;"
L2_026_000M1_scaffold_783_12
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8760..9659)
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9NFJ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS81893.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
helix-turn-helix type 11 domain-containing protein
L2_026_000M1_scaffold_783_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9731..10759)
DNA (1029bp) protein (343aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
S-adenosylmethionine--tRNA ribosyltransferase-isomerase (EC:5.-.-.-)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT5_9FIRM
L2_026_000M1_scaffold_783_14
unknown

Not on your lists

comp(10782..11027)
DNA (246bp) protein (82aa)

This feature has no annotations

L2_026_000M1_scaffold_783_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11131..12207
DNA (1077bp) protein (359aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000313|EMBL:EFB76591.1}; EC=1.2.1.11 {ECO:0000313|EMBL:EFB76591.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
aspartate semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT3_9FIRM
L2_026_000M1_scaffold_783_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12247..13137
DNA (891bp) protein (297aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT2_9FIRM
L2_026_000M1_scaffold_783_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13217..13984
DNA (768bp) protein (256aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT1_9FIRM
L2_026_000M1_scaffold_783_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13975..15207
DNA (1233bp) protein (411aa)
Bacterial capsule synthesis protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKT0_9FIRM
Bacterial capsule synthesis protein {ECO:0000313|EMBL:EFB76588.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation)
L2_026_000M1_scaffold_783_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15225..15680
DNA (456bp) protein (152aa)
ACT domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKS9_9FIRM
ACT domain protein {ECO:0000313|EMBL:EFB76587.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Aspartokinases
L2_026_000M1_scaffold_783_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15731..16711)
DNA (981bp) protein (327aa)
CAAX amino terminal protease family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKS8_9FIRM
CAAX amino terminal protease family protein {ECO:0000313|EMBL:EFB76586.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
CAAX amino terminal protease family.
L2_026_000M1_scaffold_783_21
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16698..17174)
DNA (477bp) protein (159aa)
Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4K9C9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL01442.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L2_026_000M1_scaffold_783_22
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17178..17375)
DNA (198bp) protein (66aa)
DNA-binding helix-turn-helix protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H8E3_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEU95648.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Predicted transcriptional regulators
L2_026_000M1_scaffold_783_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17547..19484
DNA (1938bp) protein (646aa)
NAD+ synthase {ECO:0000313|EMBL:EFB76583.1}; EC=6.3.1.5 {ECO:0000313|EMBL:EFB76583.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
NAD+ synthetase (EC:6.3.5.1)
NAD+ synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKS5_9FIRM
L2_026_000M1_scaffold_783_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19541..20131)
DNA (591bp) protein (197aa)
Small primase-like proteins (Toprim domain) (EC:3.1.26.8)
Putative ribonuclease M5 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKP8_9FIRM
Putative ribonuclease M5 {ECO:0000313|EMBL:EFB76556.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_026_000M1_scaffold_783_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20132..21160)
DNA (1029bp) protein (343aa)
DNA polymerase III, delta subunit {ECO:0000313|EMBL:EFB76555.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EFB76555.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA polymerase III, delta subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKP7_9FIRM
DNA polymerase III, delta subunit
L2_026_000M1_scaffold_783_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21147..23219)
DNA (2073bp) protein (691aa)
ComEC/Rec2-like protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKP6_9FIRM
ComEC/Rec2-like protein {ECO:0000313|EMBL:EFB76554.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ComEC/Rec2-related protein
L2_026_000M1_scaffold_783_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23223..23762)
DNA (540bp) protein (180aa)
Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins (EC:2.4.2.7)
Phosphoribosyl transferase domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKP5_9FIRM
Phosphoribosyl transferase domain protein {ECO:0000313|EMBL:EFB76553.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_026_000M1_scaffold_783_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23815..24159)
DNA (345bp) protein (115aa)
Histidine triad domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKP4_9FIRM
Histidine triad domain protein {ECO:0000313|EMBL:EFB76552.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases
L2_026_000M1_scaffold_783_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(24199..26859)
DNA (2661bp) protein (887aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKP3_9FIRM
L2_026_000M1_scaffold_783_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27267..27956
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKR7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76575.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted membrane protein
Displaying items 1-30 of 31 in total

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